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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Modeling misidentification errors that result from use of genetic tags in capture-recapture studies Modeling misidentification errors that result from use of genetic tags in capture-recapture studies

Misidentification of animals is potentially important when naturally existing features (natural tags) such as DNA fingerprints (genetic tags) are used to identify individual animals. For example, when misidentification leads to multiple identities being assigned to an animal, traditional estimators tend to overestimate population size. Accounting for misidentification in capture...
Authors
J. Yoshizaki, C. Brownie, K. H. Pollock, William A. Link

Informal trail monitoring protocols: Denali National Park and Preserve. Final Report, October 2011 Informal trail monitoring protocols: Denali National Park and Preserve. Final Report, October 2011

Managers at Alaska?s Denali National Park and Preserve (DENA) sponsored this research to assess and monitor visitor-created informal trails (ITs). DENA is located in south-central Alaska and managed as a six million acre wilderness park. This program of research was guided by the following objectives: (1) Investigate alternative methods for monitoring the spatial distribution, aggregate...
Authors
Jeffrey L. Marion, Jeremy F. Wimpey

Monitoring carnivore populations at the landscape scale: occupancy modelling of tigers from sign surveys Monitoring carnivore populations at the landscape scale: occupancy modelling of tigers from sign surveys

1. Assessing spatial distributions of threatened large carnivores at landscape scales poses formidable challenges because of their rarity and elusiveness. As a consequence of logistical constraints, investigators typically rely on sign surveys. Most survey methods, however, do not explicitly address the central problem of imperfect detections of animal signs in the field, leading to...
Authors
Kota Ullas Karanth, Arjun M. Gopalaswamy, Narayanarao Samba Kumar, Srinivas Vaidyanathan, James D. Nichols, Darryl I. MacKenzie

Dynamic resource allocation in conservation planning Dynamic resource allocation in conservation planning

Consider the problem of protecting endangered species by selecting patches of land to be used for conservation purposes. Typically, the availability of patches changes over time, and recommendations must be made dynamically. This is a challenging prototypical example of a sequential optimization problem under uncertainty in computational sustainability. Existing techniques do not scale...
Authors
D. Golovin, A. Krause, B. Gardner, Sarah J. Converse, S. Morey

Improving occupancy estimation when two types of observational error occur: Non-detection and species misidentification Improving occupancy estimation when two types of observational error occur: Non-detection and species misidentification

Efforts to draw inferences about species occurrence frequently account for false negatives, the common situation when individuals of a species are not detected even when a site is occupied. However, recent studies suggest the need to also deal with false positives, which occur when species are misidentified so that a species is recorded as detected when a site is unoccupied. Bias in...
Authors
David Miller, James D. Nichols, B.T. McClintock, Evan H. Campbell Grant, L.L. Bailey, L.A. Weir

Introduction Introduction

Ecotoxicology is the study of the movement of environmental contaminants through ecosystems and their effects on plants and animals. Examining tissue residues of these contaminants in biota is basic to ecotoxicology, both for understanding the movement of contaminants within organisms and through food chains, and for understanding and quantifying injuries to organisms and their...
Authors
W. Nelson Beyer, James P. Meador

Science, conservation, and camera traps Science, conservation, and camera traps

Biologists commonly perceive camera traps as a new tool that enables them to enter the hitherto secret world of wild animals. Camera traps are being used in a wide range of studies dealing with animal ecology, behavior, and conservation. Our intention in this volume is not to simply present the various uses of camera traps, but to focus on their use in the conduct of science and...
Authors
James D. Nichols, K. Ullas Karanth, Allan F. O’Connel

Mortality of American alligators attributed to cannibalism Mortality of American alligators attributed to cannibalism

Mortality of juvenile (
Authors
Michael F. Delany, Allan R. Woodward, Richard A. Kiltie, Clinton T. Moore

Migration strategies of Swan Geese Anser cygnoides from northeast Mongolia Migration strategies of Swan Geese Anser cygnoides from northeast Mongolia

In 2006–2008, 25 Swan Geese Anser cygnoides were marked with solar-powered GPS satellite transmitters in northeast Mongolia to examine the timing and pathways of their migration. Most geese began their autumn migration in August, flying southeast toward a staging area at the Yalu River Estuary on the China-North Korea border. After staging for several weeks, the Swan Geese continued to...
Authors
Nyambayar Batbayar, John Y. Takekawa, Scott H. Newman, Diann J. Prosser, Tseveenmyadag Natsagdorj, Xiangming Xiao

Demographic consequences of migratory stopover: Linking red knot survival to horseshoe crab spawning abundance Demographic consequences of migratory stopover: Linking red knot survival to horseshoe crab spawning abundance

Understanding how events during one period of the annual cycle carry over to affect survival and other fitness components in other periods is essential to understanding migratory bird demography and conservation needs. Previous research has suggested that western Atlantic red knot (Calidris canutus rufa) populations are greatly affected by horseshoe crab (Limulus polyphemus) egg...
Authors
Conor P. McGowan, James E. Hines, James D. Nichols, James E. Lyons, David Smith, Kevin S. Kalasz, Lawrence J. Niles, Amanda D. Dey, Nigel A. Clark, Philip W. Atkinson, Clive D.T. Minton, William Kendall

The greenhouse gas flux and potential global warming feedbacks of a northern macrotidal and microtidal salt marsh The greenhouse gas flux and potential global warming feedbacks of a northern macrotidal and microtidal salt marsh

Conversion of wetlands by drainage for agriculture or other anthropogenic activities could have a negative or positive feedback to global warming (GWF). We suggest that a major predictor of the GWF is salinity of the wetland soil (a proxy for available sulfate), a factor often ignored in other studies. We assess the radiative balance of two northern salt marshes with average soil...
Authors
Gail L. Chmura, Lisa Kellman, Glenn R. Guntenspergen

Use of recent and historical records to estimate status and trends of a rare and imperiled stream fish, Percina jenkinsi (Percidae) Use of recent and historical records to estimate status and trends of a rare and imperiled stream fish, Percina jenkinsi (Percidae)

Rarely encountered animals may be present but undetected, potentially leading to incorrect assumptions about the persistence of a local population or the conservation priority of a particular area. The federally endangered and narrowly endemic Conasauga logperch (Percina jenkinsi) is a good example of a rarely encountered fish species of conservation concern, for which basic population...
Authors
Megan M. Hagler, Mary Freeman, Seth J. Wenger, Byron J. Freeman, Patrick L. Rakes, J.R. Shute
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