Publications
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Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River alluvial valley Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River alluvial valley
• Premise of the Study: Studies of the geographic patterns of genetic variation can give important insights into the past population structure of species. Our study species, Taxodium distichum L. (bald‐cypress), prefers riparian and wetland habitats and is widely distributed in southeastern North America and Mexico. We compared the genetic variation of T. distichum with that of its close...
Authors
Junko Kusumi, Li Zidong, Tomoyuki Kado, Yoshihiko Tsumura, Beth A. Middleton, Hidenori Tachida
Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models
Quantifying patterns of temporal trends in species assemblages is an important analytical challenge in community ecology. We describe methods of analysis that can be applied to a matrix of counts of individuals that is organized by species (rows) and time-ordered sampling periods (columns). We first developed a bootstrapping procedure to test the null hypothesis of random sampling from a
Authors
Nicholas J. Gotelli, Robert M. Dorazio, Aaron M. Ellison, Gary D. Grossman
The ODD protocol: A review and first update The ODD protocol: A review and first update
The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs). The primary objectives of ODD are to make model descriptions more understandable and complete, thereby making ABMs less subject to criticism for being irreproducible. We have systematically evaluated existing uses...
Authors
Volker Grimm, Uta Berger, Donald L. DeAngelis, J. Gary Polhill, Jarl Giske, Steve F. Railsback
Temperature inverted haloclines provide winter warm-water refugia for manatees in southwest Florida Temperature inverted haloclines provide winter warm-water refugia for manatees in southwest Florida
Florida manatees (Trichechus manatus latirostris) overwintering in the Ten Thousand Islands and western Everglades have no access to power plants or major artesian springs that provide warm-water refugia in other parts of Florida. Instead, hundreds of manatees aggregate at artificial canals, basins, and natural deep water sites that act as passive thermal refugia (PTR). Monitoring at two...
Authors
Bradley Stith, James P. Reid, Catherine A. Langtimm, Eric D. Swain, Terry J. Doyle, Daniel H. Slone, Jeremy D. Decker, Lars E. Soderqvist
Ecological contingency in the effects of climatic warming on forest herb communities Ecological contingency in the effects of climatic warming on forest herb communities
Downscaling from the predictions of general climate models is critical to current strategies for mitigating species loss caused by climate change. A key impediment to this downscaling is that we lack a fully developed understanding of how variation in physical, biological, or land-use characteristics mediates the effects of climate change on ecological communities within regions. We...
Authors
Susan Harrison, Ellen Ingman Damschen, James B. Grace
Reclaiming freshwater sustainability in the Cadillac Desert Reclaiming freshwater sustainability in the Cadillac Desert
Increasing human appropriation of freshwater resources presents a tangible limit to the sustainability of cities, agriculture, and ecosystems in the western United States. Marc Reisner tackles this theme in his 1986 classic Cadillac Desert: The American West and Its Disappearing Water. Reisner's analysis paints a portrait of region-wide hydrologic dysfunction in the western United States
Authors
John L. Sabo, Tushar Sinha, Laura C. Bowling, Gerrit H.W. Schoups, Wesley W. Wallender, Michael E. Campana, Keith A. Cherkauer, Pam L. Fuller, William L. Graf, Jan W. Hopmans, John S. Kominoski, Carissa Taylor, Stanley W. Trimble, Robert H. Webb, Ellen E. Wohl
Words matter: Recommendations for clarifying coral disease nomenclature and terminology Words matter: Recommendations for clarifying coral disease nomenclature and terminology
Coral diseases have caused significant losses on Caribbean reefs and are becoming a greater concern in the Pacific. Progress in coral disease research requires collaboration and communication among experts from many different disciplines. The lack of consistency in the use of terms and names in the recent scientific literature reflects the absence of an authority for naming coral...
Authors
Caroline S. Rogers
Fish population dynamics in a seasonally varying wetland Fish population dynamics in a seasonally varying wetland
Small fishes in seasonally flooded environments such as the Everglades are capable of spreading into newly flooded areas and building up substantial biomass. Passive drift cannot account for the rapidity of observed population expansions. To test the reaction-diffusion mechanism for spread of the fish, we estimated their diffusion coefficient and applied a reaction-diffusion model. This...
Authors
Donald L. DeAngelis, Joel C. Trexler, Chris Cosner, Adam Obaza, Fred Jopp
Climate change effects on an endemic-rich edaphic flora: resurveying Robert H. Whittaker's Siskiyou sites (Oregon, USA) Climate change effects on an endemic-rich edaphic flora: resurveying Robert H. Whittaker's Siskiyou sites (Oregon, USA)
Species with relatively narrow niches, such as plants restricted (endemic) to particular soils, may be especially vulnerable to extinction under a changing climate due to the enhanced difficulty they face in migrating to suitable new sites. To test for community-level effects of climate change, and to compare such effects in a highly endemic-rich flora on unproductive serpentine soils vs...
Authors
Ellen Ingman Damschen, Susan Harrison, James B. Grace
Challenges and opportunities for integrating lake ecosystem modelling approaches Challenges and opportunities for integrating lake ecosystem modelling approaches
A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others (‘reinventing the wheel’). The other challenge is to avoid focusing on only one type of model, while...
Authors
Wolf M. Mooij, Dennis Trolle, Erik Jeppesen, George Arhonditsis, Pavel V. Belolipetsky, Deonatus B.R. Chitamwebwa, Andrey G. Degermendzhy, Donald L. DeAngelis, Lisette N. De Senerpont Domis, Andrea S. Downing, J. Alex Elliott, Carlos Ruberto Fragoso, Ursula Gaedke, Svetlana N. Genova, Ramesh D. Gulati, Lars Hakanson, David P. Hamilton, Matthew R. Hipsey, Jochem ’t Hoen, Stephan Hulsmann, F. Hans Los, Vardit Makler-Pick, Thomas Petzoldt, Igor G. Prokopkin, Karsten Rinke, Sebastiaan A. Schep, Koji Tominaga, Anne A. Van Dam, Egbert H. Van Nes, Scott A. Wells, Jan H. Janse
Simultaneous modeling of habitat suitability, occupancy, and relative abundance: African elephants in Zimbabwe Simultaneous modeling of habitat suitability, occupancy, and relative abundance: African elephants in Zimbabwe
The recent development of statistical models such as dynamic site occupancy models provides the opportunity to address fairly complex management and conservation problems with relatively simple models. However, surprisingly few empirical studies have simultaneously modeled habitat suitability and occupancy status of organisms over large landscapes for management purposes. Joint modeling...
Authors
Julien Martin, Simon Chamaille-Jammes, James D. Nichols, Herve Fritz, James E. Hines, Christopher J. Fonnesbeck, Darryl I. MacKenzie, Larissa L. Bailey
Physiological response of wild dugongs (Dugong dugon) to out-of-water sampling for health assessment Physiological response of wild dugongs (Dugong dugon) to out-of-water sampling for health assessment
The dugong (Dugong dugon) is a vulnerable marine mammal with large populations living in urban Queensland waters. A mark-recapture program for wild dugongs has been ongoing in southern Queensland since 2001. This program has involved capture and in-water sampling of more than 700 dugongs where animals have been held at the water surface for 5 min to be gene-tagged, measured, and biopsied...
Authors
Janet M. Lanyon, Helen L. Sneath, Trevor Long, Robert K. Bonde