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Western Fisheries Research Center

Publications

Filter Total Items: 2,081
Year Published: 2018

Effects of transmitter type, tagging method, body size, and temperature on behavior, physiology, and swimming performance of juvenile Chinook salmon (Oncorhynchus tshawytscha)

The objective of this study was to assess the impact of different tagging methods and transmitter types on juvenile salmonid behavior, mortality, physiology, and swimming performance over a range of water temperatures and fish sizes.In Chapter 1, two laboratory experiments were conducted to assess maximum burst-swimming speeds, the probability of...

Perry, Russell W.; Liedtke, Theresa L.
Perry, R.W., and Liedtke, T.L., eds., 2018, Effects of transmitter type, tagging method, body size, and temperature on behavior, physiology, and swimming performance of juvenile Chinook salmon (Oncorhynchus tshawytscha): U.S. Geological Survey Open Report 2018–1186, 74 p., https://doi.org/10.3133/ofr20181186.

Year Published: 2018

Fish behavior and abundance monitoring near a floating surface collector in North Fork Reservoir, Clackamas River, Oregon, using multi-beam acoustic imaging sonar

An imaging sonar was used to assess the behavior and abundance of fish sized the same as salmonid smolt and bull trout (Salvelinus confluentus) at the entrance to the juvenile fish floating surface collector (FSC) at North Fork Reservoir, Oregon. The purpose of the FSC is to collect downriver migrating juvenile salmonids (Chinook salmon [...

Smith, Collin D.; Plumb, John M.; Adams, Noah S.
Smith, C.D., Plumb J.M., and Adams, N.S. 2018, Fish behavior and abundance monitoring near a floating surface collector in North Fork Reservoir, Clackamas River, Oregon, using multi-beam acoustic imaging sonar: U.S. Geological Survey Open-File Report 2018-1182, 28 p., https://doi.org/10.3133/ofr20181182.

Year Published: 2018

Application of the Stream Salmonid Simulator (S3) to the restoration reach of the Trinity River, California—Parameterization and calibration

Executive SummaryIn this report, we constructed and parameterized the Stream Salmonid Simulator (S3) for the 64-kilometer “Restoration Reach” of the Trinity River, just downstream of Lewiston Dam in northern California. S3 is a deterministic life-stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon...

Perry, Russell W.; Jones, Edward C.; Plumb, John M.; Som, Nicholas A.; Hetrick, Nicholas J.; Hardy, Thomas B.; Polos, Joseph C; Martin, Aaron C.; Alvarez, Justin S.; De Juilio, Kyle P.
Perry, R.W., Jones, E.C., Plumb, J.M., Som, N.A., Hetrick, N.J., Hardy, T.B., Polos, J.C., Martin, A.C., Alvarez, J.S., and De Juilio, K.P., 2018, Application of the Stream Salmonid Simulator (S3) to the restoration reach of the Trinity River, California—Parameterization and calibration: U.S. Geological Survey Open-File Report 2018-1174, 64 p., https://doi.org/10.3133/ofr20181174.

Year Published: 2018

Descriptive models for epithermal gold-silver deposits: Chapter Q in

Epithermal gold-silver deposits are vein, stockwork, disseminated, and replacement deposits that are mined primarily for their gold and silver contents; some deposits also contain substantial resources of lead, zinc, copper, and (or) mercury. These deposits form in the uppermost parts of the crust, at depths less than about 1,500 meters below the...

John, David A.; Vikre, Peter G.; du Bray, Edward A.; Blakely, Richard J.; Fey, David L.; Rockwell, Barnaby W.; Mauk, Jeffrey L.; Anderson, Eric D.; Graybeal, Frederick T.
John, D.A., Vikre, P.G., du Bray, E.A., Blakely, R.J., Fey, D.L., Rockwell, B.W., Mauk, J.L., Anderson, E.D., and Graybeal, F.T., 2018, Descriptive models for epithermal gold-silver deposits: U.S. Geological Survey Scientific Investigations Report 2010–5070–Q, 247 p., https://doi.org/10.3133/sir20105070Q.

Year Published: 2018

Study 11. Effects of Nanophyetus on the swimming performance and survival of steelhead smolts AND studies to understand and manage the Nanophyetus cercaria

Recent field surveillances indicated that outmigrating steelhead smolts in several south Puget Sound watersheds are infected with the digenean trematode Nanophyetus salmonicola at high prevalence and intensity (Chen et al Accepted). The apparent severity of these infections, especially in the Nisqually and Green / Duwamish Rivers, lead to the...

Hershberger, Paul

Year Published: 2018

Upstream migration and spawning success of Chinook salmon in a highly developed, seasonally warm river system

This review summarizes what is known about the influence of water temperature and velocity on the migration and spawning success of an inland population of Chinook salmon Oncorhynchus tshawytscha. Models are then developed and used to illustrate how migration and spawning success might change if temperatures and velocities increase under a...

Connor, William P.; Tiffan, Kenneth F.; Chandler, James A.; Rondorf, Dennis W.; Arnsberg, Billy D.; Anderson, Kelvin C.
Connor, W.P., K.F. Tiffan, J.A. Chandler, D.W. Rondorf, B.D. Aarnsberg, and K.C. Anderson. 2018. Upstream migration and spawning success of Chinook salmon in a highly developed, seasonally warm river system. Reviews in Fisheries Science and Aquaculture. DOI: 10.1080/23308249.2018.1477736.

Year Published: 2018

Molecular systematics of sturgeon nucleocytoplasmic large DNA viruses

Namao virus (NV) is a sturgeon nucleocytoplasmic large DNA virus (sNCLDV) that can cause a lethal disease of the integumentary system in lake sturgeon Acipenser fulvescens. As a group, the sNCLDV have not been assigned to any currently recognized taxonomic family of viruses. In this study, a data set of NV DNA sequences was generated and...

Clouthier, Sharon; Anderson, Eric; Kurath, Gael; Breyta, Rachel
Clouthier, S., E. Anderson, G. Kurath, and R. Breyta. 2018. Molecular systematics of sturgeon nucleocytoplasmic large DNA viruses. Molecular Phylogenetics and Evolution 128: 26-37.

Year Published: 2018

A Bayesian life-cycle model to estimate escapement at maximum sustained yield in salmon based on limited information

Life-cycle models combine several strengths for estimating population parameters and biological reference points of harvested species and are particularly useful for those exhibiting distinct habitat shifts and experiencing contrasting environments. Unfortunately, time series data are often limited to counts of adult abundance and harvest. By...

Ohlberger, Jan; Brinkman, Samuel J.; Crain, Patrick; Pess, George R.; Duda, Jeffrey J.; Buehrens, Thomas W.; Quinn, Thomas P.; Hilborn , Ray
Ohlberger, J., S.J. Brenkman, P. Crain, G.R. Pess, J.J. Duda, T.W. Behrens, T.P. Quinn, and R. Hilborn. 2018. A Bayesian life-cycle model to estimate escapement at maximum sustained yield in salmon based on limited information. Canadian Journal of Fisheries and Aquatic Sciences (Published on the web 17 May 2018).

Year Published: 2018

Broad-spectrum antiviral JL122 blocks infection and inhibits transmission of aquatic rhabdoviruses

The aquaculture industry is growing rapidly to meet the needs for global protein consumption. Viral diseases in aquaculture are quite challenging due to lack of treatment options as well as limited injection-delivery vaccines, which are costly. Thus, water-immersion antiviral treatments are highly desirable. This study focused on broad-...

Balmer, Bethany F.; Getchell, Rodman G.; Powers, Rachel L.; Lee, Jihye; Zhang, Tinghu; Jung, Michael E.; Purcell, Maureen K.; Snekvik, Kevin; Aguilar, Hector C.
Balmer, B.F., R.G. Getchell, R.L. Powers, J. Lee, T. Zhang, M.E. Jung, M.K. Purcell, K.Snekvik, and H.C. Aguilar. Broad-spectrum antiviral JL122 blocks infection and inhibits transmission of aquatic rhabdoviruses. Virology 525: 143-149.

Year Published: 2018

Emigration and transportation stress of juvenile Chinook salmon relative to their reintroduction upriver of Shasta Dam, California, 2017–18

The Bureau of Reclamation supports the Shasta Dam Fish Passage Evaluation (SDFPE; Yip, 2015) program, and in 2016 set out to determine the feasibility of reintroducing winter-run and spring-run Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) to tributaries upstream of Shasta Dam. Ideally, reintroduction strategy includes...

Adams, Noah S.; Liedtke, Theresa L.; Plumb, John M.; Weiland, Lisa K.; Hansen, Amy C.; Evans, Scott D.
Adams, N.S., Liedtke, T.L., Plumb, J.M., Hansen, A.C., Evans, S.D., and Weiland., L.K., 2018, Emigration and transportation stress of juvenile Chinook salmon relative to their reintroduction upriver of Shasta Dam, California, 2017–18: U.S. Geological Survey Open-File Report 2018-1144, 60 p., https://doi.org/10.3133/ofr20181144.

Year Published: 2018

A snapshot of women of the U.S. Geological Survey in STEM and related careers

IntroductionThe term “STEM” has been used to group together the fields of science, technology, engineering, and mathematics and to describe education and professions related to these fields. The professional fields connected to STEM education are thought of as engineering, medicine, and computer technology. Yet these professional fields are merely...

Aragon-Long, Susan C.; Burkett, Virginia R.; Weyers, Holly S.; Haig, Susan M.; Davenport, Marjorie S.; Warner, Kelly L.
Aragon-Long, S.C., Burkett, V.R., Weyers, H.S., Haig, S.M., Davenport, M.S., and Warner, K.L., 2018, A snapshot of women of the U.S. Geological Survey in STEM and related careers: U.S. Geological Survey Circular 1443, 100 p., https://doi.org/10.3133/cir1443.

Year Published: 2018

A bioenergetics evaluation of temperature‐dependent selection for the spawning phenology by Snake River fall Chinook salmon

High water temperatures can increase the energetic cost for salmon to migrate and spawn, which can be important for Snake River fall‐run Chinook salmon because they migrate great distances (>500 km) at a time when river temperatures (18–24°C) can be above their optimum temperatures (16.5°C). Average river temperatures and random...

Plumb, John M.
Plumb, J.M. 2018. A bioenergetics evaluation of temperature-dependent selection for the spawning phenology by Snake River fall Chinook salmon. Ecol. Evol. 2018 1-13 (Early View).