Genotypes for six rare plant species found in San Diego County in 2016-2017
November 20, 2018
To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis.
These data support the following publication:
Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in San Diego County, California: U.S. Geological Survey Open-File Report 2018-1175, 60 p., https://doi.org/10.3133/ofr20181175.
These data support the following publication:
Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in San Diego County, California: U.S. Geological Survey Open-File Report 2018-1175, 60 p., https://doi.org/10.3133/ofr20181175.
Citation Information
| Publication Year | 2018 |
|---|---|
| Title | Genotypes for six rare plant species found in San Diego County in 2016-2017 |
| DOI | 10.5066/P9OWNCG8 |
| Authors | Elizabeth R Milano, Amy Vandergast |
| Product Type | Data Release |
| Record Source | USGS Asset Identifier Service (AIS) |
| USGS Organization | Western Ecological Research Center - Headquarters |
| Rights | This work is marked with CC0 1.0 Universal |
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Population genomic surveys for six rare plant species in San Diego County, California
San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low...
Authors
Elizabeth R. Milano, Amy G. Vandergast
Related
Population genomic surveys for six rare plant species in San Diego County, California
San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low...
Authors
Elizabeth R. Milano, Amy G. Vandergast