Software
An official USGS software project is code reviewed and approved at the bureau-level for distribution.
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ocelote 1.0.0 ocelote 1.0.0
This release introduces the ocelote package. The package includes routines to run assessments, manage assessment metadata, and upload assessments to Amazon S3 and ScienceBase. The package consists of the following commands: * authenticate s3: Acquires, tests, and stores credentials for S3 uploads * authenticate sciencebase: Acquires, tests, and stores credentials for ScienceBase uploads...
PWFDF Data Specification PWFDF Data Specification
This is a permanent record of all current and former versions of the PWFDF data specification. The spec describes: the organization of assessments on ScienceBase, ScienceBase metadata unique to the collection, and the files, data, and metadata contained within individual assessments.
A decision support tool for assessing current and future occupancy trends for boreal toads in the Southern Rocky Mountains A decision support tool for assessing current and future occupancy trends for boreal toads in the Southern Rocky Mountains
This is repository contains all publicly-released code and data supporting the Southern Rocky Mountains boreal toad decision support tool, which was developed as a part of a North Central Climate Adaptation Science Center-funded project entitled “A framework for guiding management decisions for amphibians in an uncertain future”, by Dr. Amanda M. Kissel (USGS), Dr. Erin Muths (USGS), Mae...
R code for the workflow and analysis of spatio-temporal analysis of smallmouth bass (Micropterus dolomieu) growth in Pennsylvania Rivers R code for the workflow and analysis of spatio-temporal analysis of smallmouth bass (Micropterus dolomieu) growth in Pennsylvania Rivers
Using a 36-year dataset of smallmouth bass length-at-age, we assess the effect of population density, average critical period temperature, and average spring flow rate on early life growth rate. We also looked at how a disease outbreak in 2004 impacted early life growth rates in reaches with and without the disease. The code in this release provides the R scripts to perform this analysis...
Code to examine habitat selection and survival of greater sage-grouse in Nevada and northeastern California Code to examine habitat selection and survival of greater sage-grouse in Nevada and northeastern California
This repository centralizes R code used to examine habitat selection and survival of greater sage-grouse (Centrocercus urophasianus) during multiple seasons and life stages, utilizing data collected from a wide range of study sites in Nevada and California, USA. The R script "selection_model.R" provides code for a GLMM framework with regularization within a Bayesian modeling environment...
NHM-Assist NHM-Assist
NHM-Assist is a collection of python workflows presented in Jupyter notebooks for evaluating, running and interpreting National Hydrologic Model (NHM) domains using pywatershed. NHM-Assist allows users to: evaluate hydrofabric element connections such as hydrologic response unit connections to streamflow segments, segment routing order, and gage placement accuracy; display NHM domain...