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Software

An official USGS software project is code reviewed and approved at the bureau-level for distribution.

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REDPy - Repeating Earthquake Detector in Python (Version 1.0.0) REDPy - Repeating Earthquake Detector in Python (Version 1.0.0)

REDPy (Repeating Earthquake Detector in Python) is a tool for automated detection and analysis of repeating earthquakes in continuous data. It works without any previous assumptions of what repeating seismicity looks like (that is, does not require a template event). Repeating earthquakes are clustered into families based on waveform similarity via cross-correlation across multiple...

Population Viability Model for Western Pond Turtle Population Viability Model for Western Pond Turtle

The code herein uses a triple loop structure to simulate a spatially implicit stage structured matrix model for two species of western pond turtle with parametric uncertainty and temporal stochasticity.

digger: A python package for D-Claw model inputs digger: A python package for D-Claw model inputs

Digger is a python package that provides a number of pre- and post-processing tools for working with the D-Claw model.

R code for calculating imperilment of freshwater fish with a Bayesian belief network R code for calculating imperilment of freshwater fish with a Bayesian belief network

This R script is reproduces a Bayesian belief network built within the propriety software program, Netica. The R- and Netica-based belief networks were used in Dunn and Schumann et al. (in press), which presents an approach for calculating imperilment of freshwater fishes.

algaeClassify algaeClassify

The goal of algaeClassify is to facilitate the analysis of taxonomic and functional trait data for phytoplankton.

Population Viability Model for Spot-tailed earless lizard Population Viability Model for Spot-tailed earless lizard

Code for simulating Spot-tailed earless lizard populations under habitat loss and road mortality threats in central Texas
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