Software

AMMonitor is an open source R package dedicated to collecting, storing, and analyzing AMU information in a way that 1) is cost-effective, 2) can efficiently process and store information, and 3) can take advantage of the vast and growing community of R analytics.

Matlab m-files that were used to generate performance tests and hindcasts for geomorphologic characteristics and piping plover habitat probabilities for Fire Island New York

Hyperparameter optimization approaches were applied to improve performance and accuracy of groundwater flow models. Freely available new software, NWTOPT, is described that uses Tree of Parzen Estimators (TPE) and Random Search optimization algorithms to optimize MODFLOW-NWT’s solver settings. We ran 3500 trials on a steady-state and transient model. To quantify the performance of...

-R code to create and fit dynamic occupancy models to Dixie Valley Toad survey data in JAGS and produce useful summaries of model results. This script will perform the Gibbs Variable Selection (GVS) using the initial set of environmental covariates, and then fit the "final" model using only important environmental covariates. The dynamic occupancy model is adapted from the model...

This repository contains the source code for the oaftools package. The package creates visual tools to study aftershock behavior and the performance of the Operational Aftershock Forecasting system. The visual tools are: A global map, rendered by Leaflet to show the distribution of earthquakes with forecasts A local map, rendered by Leaflet to show the aftershock sequence and the...

Shinymgr is an R package that provides a unifying framework for managing and deploying Shiny applications that consist of modules. Developers use the shinymgr framework to write modules and seamlessly combine them into Shiny apps, and users of these apps can execute reproducible analyses that can be incorporated into reports for rapid dissemination. The package includes 11 instructional...