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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

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Genotyping-by-sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes Genotyping-by-sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes

Effective resource management depends on our ability to partition diversity into biologically meaningful units. Recent evolutionary divergence, however, can often lead to ambiguity in morphological and genetic differentiation, complicating the delineation of valid conservation units. Such is the case with the "coregonine problem," where recent postglacial radiations of coregonines into...
Authors
Amanda S. Ackiss, Wesley Larson, Wendylee Stott

Effect of environmental factors on the movement of Rainbow Trout in the Deerfield Reservoir System Effect of environmental factors on the movement of Rainbow Trout in the Deerfield Reservoir System

Spawning movements and the factors affecting those movements are often of interest to fisheries managers and biologists. The objective of this study was to examine the influence of environmental factors on the movements of an adfluvial Rainbow Trout Oncorhynchus mykiss population in the Black Hills, South Dakota. Three unique strains of hatchery-reared Rainbow Trout and resident Rainbow...
Authors
Jeremy Kientz, Jacob L. Davis, Steven R. Chipps, Gregory Simpson

Understanding effects of small dams on benthic metabolism and primary production in temperate forested streams Understanding effects of small dams on benthic metabolism and primary production in temperate forested streams

Dams can alter the chemical and physical conditions of downstream environments by increasing stream temperatures, altering nutrient limitation, reducing flow variability, and reducing fine sediment deposition. However, little is known about how fundamental stream ecosystem processes like productivity and respiration respond to dams. Nutrient diffusing substrates were installed in three...
Authors
John P. Ludlam, Allison H. Roy

Use of underwater videography to quantify conditions utilized by endangered Moapa Dace While spawning Use of underwater videography to quantify conditions utilized by endangered Moapa Dace While spawning

Advances in underwater camera technology provide an affordable means to quantify the environmental conditions under which fish spawn. This information is important for investigating spawning ecology, managing habitat, or providing information for captive breeding programs. We deployed 12 modified security cameras underwater to identify environmental conditions related to the spawning...
Authors
Jack E. Ruggirello, Scott A. Bonar, Olin G. Feuerbacher, Lee H. Simons

A flexible survey design for monitoring spatiotemporal fish richness in nonwadeable rivers: optimizing efficiency by integrating gears A flexible survey design for monitoring spatiotemporal fish richness in nonwadeable rivers: optimizing efficiency by integrating gears

We designed a flexible protocol for monitoring fish species richness in nonwadeable rivers. Nine sites were sampled seasonally with six gears in two physiographic regions in Missouri (USA). Using resampling procedures and mixed-effects modeling, we quantified richness and compositional overlap among gears, identified efficient gear combinations, and evaluated protocol performance across...
Authors
Corey G. Dunn, Craig P. Paukert

Walleye growth declines following zebra mussel and Bythotrephes invasion Walleye growth declines following zebra mussel and Bythotrephes invasion

Invasive species represent a threat to aquatic ecosystems globally; however, impacts can be heterogenous across systems. Documented impacts of invasive zebra mussels (Dreissena polymorpha) and spiny water fleas (Bythotrephes cederströmii; hereafter Bythotrephes) on native fishes are variable and context dependent across locations and time periods. Here, we use a hierarchical Bayesian...
Authors
Tyler D. Ahrenstorff, Gretchen J. A. Hansen, Bethany J. Bethke, Josh Dumke, Jodie Hirsch, Katya E. Kovalenko, Jaime F. LeDuc, Ryan P Maki, Heidi Rantala, Tyler Wagner

Longitudinal distribution of uncommon fishes in a species-rich basin Longitudinal distribution of uncommon fishes in a species-rich basin

The spatial organization of fishes in a river system was investigated to evaluate the longitudinal distribution of uncommon species. It was anticipated that overall richness of the fish community would increase in a downstream direction together with habitat extent, but that more uncommon species would occur upstream owing to greater heterogeneity among sites.Fish were collected between...
Authors
Leandro E. Miranda, K.J. Killgore

Resilience management for conservation of inland recreational fisheries Resilience management for conservation of inland recreational fisheries

Resilience thinking has generated much interest among scientific communities, yet most resilience concepts have not materialized into management applications. We believe that using resilience concepts to characterize systems and the social and ecological processes affecting them is a way to integrate resilience into better management decisions. This situation is exemplified by inland...
Authors
E. V. Camp, M. A. Kaemingk, R. N. M. Ahrens, W. M. Potts, W. E. Pine, O. L. F Weyl, Kevin L. Pope

Combined influence of intrinsic and environmental factors in shaping productivity in a small pelagic gull, the black-legged kittiwake Rissa tridactyla Combined influence of intrinsic and environmental factors in shaping productivity in a small pelagic gull, the black-legged kittiwake Rissa tridactyla

While we have a good understanding in many systems of the effects of single variable changes on organisms, we understand far less about how variables act in concert to affect living systems, where interactions among variables can lead to unanticipated results. We used mixed-effect models to evaluate the effects of multiple variables that we expected to play a role in the early...
Authors
Aly McKnight, David B. Irons, Cyndy Loftin, Shawn T. McKinney, Brian J. Olsen

Biotic interactions help explain variation in elevational range limits of birds among Bornean mountains Biotic interactions help explain variation in elevational range limits of birds among Bornean mountains

Aim Physiological tolerances and biotic interactions along habitat gradients are thought to influence species occurrence. Distributional differences caused by such forces are particularly noticeable on tropical mountains, where high species turnover along elevational gradients occurs over relatively short distances and elevational distributions of particular species can shift among...
Authors
Ryan C. Burner, Andy J. Boyce, David Bernasconi, Alison R. Styring, Subir B. Shakya, Chandradewana Boer, Mustafa Abdul Rahman, Thomas E. Martin, Frederick H. Sheldon

Nest site selection influences cinnamon teal nest survival in Colorado Nest site selection influences cinnamon teal nest survival in Colorado

Nest survival of ducks is partially a function of the spatiotemporal characteristics of the site at which a bird chooses to nest. Nest survival is also a fundamental component of population growth in waterfowl but is relatively unstudied for cinnamon teal (Spatula cyanoptera). We investigated cinnamon teal nest survival in a managed wetland complex in southern Colorado, USA, and assessed...
Authors
William L. Kendall, Casey M. Setash, David Olson

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Yellow perch, Perca flavescens, is an ecologically and economically important species native to a large portion of the northern United States and southern Canada and is also a promising candidate species for aquaculture. However, no yellow perch reference genome has been available to facilitate improvements in both fisheries and aquaculture management practices. By combining Oxford...
Authors
Romain Feron, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, Olivier Bouchez, Camille Eché, Sophie Valière, Cecile Donnadieu, Pierrick Haffray, Anastasia Bestin, Romain Morvezen, Herve Acoloque, Peter T. Euclide, Ming Wen, Elodie Jouano, Manfred Schartl, John Postlethwait, Claire Schraidt, Mark R. Christie, Wesley Larson, Amaury Herpin, Yann Guiguen
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