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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

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A critical assessment of the ecological assumptions underpinning compensatory mitigation of salmon-derived nutrients A critical assessment of the ecological assumptions underpinning compensatory mitigation of salmon-derived nutrients

We critically evaluate some of the key ecological assumptions underpinning the use of nutrient replacement as a means of recovering salmon populations and a range of other organisms thought to be linked to productive salmon runs. These assumptions include: (1) nutrient mitigation mimics the ecological roles of salmon, (2) mitigation is needed to replace salmon-derived nutrients and...
Authors
Scott F. Collins, Amy M. Marcarelli, Colden V. Baxter, Mark S. Wipfli

Catchment-wide survival of wild- and hatchery-reared Atlantic salmon smolts in a changing system Catchment-wide survival of wild- and hatchery-reared Atlantic salmon smolts in a changing system

We developed a hierarchical multistate model to estimate survival of Atlantic salmon (Salmo salar) smolts in the Penobscot River, USA, over a decade during which two mainstem dams were removed from the catchment. We investigated effects of (i) environmental factors, (ii) rearing history, and (iii) management actions, including dam removal, turbine shutdown, and installation of new...
Authors
Daniel S. Stich, Michael M. Bailey, Christopher M. Holbrook, Michael T. Kinnison, Joseph D. Zydlewski

Developing nondestructive techniques for managing conflicts between fisheries and double-crested cormorant colonies Developing nondestructive techniques for managing conflicts between fisheries and double-crested cormorant colonies

Double-crested cormorants (Phalacrocorax auritus) have been identified as the source of significant mortality to juvenile salmonids (Oncorhynchus spp.) in the Columbia River Basin. Management plans for reducing the size of a large colony on East Sand Island (OR, USA) in the Columbia River estuary are currently being developed. We evaluated habitat enhancement and social attraction as
Authors
Yasuko Suzuki, Daniel D. Roby, Donald E. Lyons, Karen Courtot, Ken Collis

A food web modeling analysis of a Midwestern, USA eutrophic lake dominated by non-native Common Carp and Zebra Mussels A food web modeling analysis of a Midwestern, USA eutrophic lake dominated by non-native Common Carp and Zebra Mussels

Food web modeling is recognized as fundamental to understanding the complexities of aquatic systems. Ecopath is the most common mass-balance model used to represent food webs and quantify trophic interactions among groups. We constructed annual Ecopath models for four consecutive years during the first half-decade of a zebra mussel invasion in shallow, eutrophic Clear Lake, Iowa, USA, to...
Authors
Michael E. Colvin, Clay Pierce, Timothy W. Stewart

Atypical den use of Carolina Northern Flying Squirrels (Glaucomys sabrinus coloratus) in the southern Appalachian Mountains Atypical den use of Carolina Northern Flying Squirrels (Glaucomys sabrinus coloratus) in the southern Appalachian Mountains

Glaucomys sabrinus coloratus (Carolina Northern Flying Squirrel) is a federally endangered subspecies that occurs in high elevation forests of the southern Appalachian Mountains. Denning sites may be a limiting factor for this subspecies in areas where cavity trees are not abundant or where interspecific competition from other tree squirrels occurs. This shortage can result in use of...
Authors
Corinne A. Diggins, Christine A. Kelly, W. Mark Ford

Camera traps and mark-resight models: The value of ancillary data for evaluating assumptions Camera traps and mark-resight models: The value of ancillary data for evaluating assumptions

Unbiased estimators of abundance and density are fundamental to the study of animal ecology and critical for making sound management decisions. Capture–recapture models are generally considered the most robust approach for estimating these parameters but rely on a number of assumptions that are often violated but rarely validated. Mark-resight models, a form of capture–recapture, are...
Authors
Arielle W. Parsons, Theodore R. Simons, Kenneth H. Pollock, Michael K. Stoskopf, Jessica J. Stocking, Allan F. O’Connell

Grasshopper sparrow reproductive success and habitat use on reclaimed surface mines varies by age of reclamation Grasshopper sparrow reproductive success and habitat use on reclaimed surface mines varies by age of reclamation

We studied 3 mountaintop mining–valley fill (MTMVF) complexes in southern West Virginia, USA to examine grasshopper sparrow (Ammodramus savannarum pratensis) demographic response to different age classes of mine land reclamation. For 71 nests monitored during the 2001–2002 breeding seasons, overall nest success (36%) was within the range of nest success rates previously reported for this...
Authors
Petra Wood, Frank K. Ammer

The global status of freshwater fish age validation studies and a prioritization framework for future research The global status of freshwater fish age validation studies and a prioritization framework for future research

Age information derived from calcified structures is commonly used to estimate recruitment, growth, and mortality for fish populations. Validation of daily or annual marks on age structures is often assumed, presumably due to a lack of general knowledge concerning the status of age validation studies. Therefore, the current status of freshwater fish age validation studies was summarized...
Authors
Kevin L. Pope, Martin J. Hamel, Mark A. Pegg, Jonathan J. Spurgeon

Assessing dorsal scute microchemistry for reconstruction of shortnose sturgeon life histories Assessing dorsal scute microchemistry for reconstruction of shortnose sturgeon life histories

The imperiled status of sturgeons worldwide places priority on the identification and protection of critical habitats. We assessed the micro-structural and micro-chemical scope for a novel calcified structure, dorsal scutes, to be used for reconstruction of past habitat use and group separation in shortnose sturgeon (Acipenser brevirostrum). Dorsal scutes contained a dual-layered...
Authors
Matthew E. Altenritter, Michael T. Kinnison, Gayle B. Zydlewski, David H. Secor, Joseph D. Zydlewski

Growth and contribution of stocked channel catfish, Ictalurus punctatus (Rafinesque, 1818): the importance of measuring post-stocking performance Growth and contribution of stocked channel catfish, Ictalurus punctatus (Rafinesque, 1818): the importance of measuring post-stocking performance

In this study it was sought to quantify post-stocking growth, survival, and contribution of advanced size (178 mm total length [TL]) channel catfish Ictalurus punctatus fingerlings, something rarely done. Channel catfish populations were evaluated before (May 2010) and after (May to August 2011 and 2012) stocking. Relative abundance, stocking contribution, and growth were different (P
Authors
David R. Stewart, James M. Long

Spotted bass Micropterus punctulatus (Rafinesque 1819) Spotted bass Micropterus punctulatus (Rafinesque 1819)

Three subspecies of Spotted Bass Micropterus punctulatus were historically recognized: the smaller Northern Spotted Bass M. p. punctulatus, the larger, longer-lived Alabama Spotted Bass M. p. henshalli, and the now invalidated Wichita Spotted Bass M. p. wichitae (Bailey and Hubbs 1940; Cofer 1995; Warren 2009; Rider and Maceina 2015, this volume). The subspecific status has been examined...
Authors
Timothy N. Churchill, Phillip William Bettoli
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