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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5011

A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA - An increasingly obscure perspective” A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA - An increasingly obscure perspective”

We appreciate the conversation put forward by Iversen et al. (2015) in their response to our article “Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix” in the 2015 environmental DNA special issue of Biological Conservation. We agree with Iversen et al.'s concern about overly optimistic conclusions that...
Authors
Katy E. Klymus, Cathy A. Richter, Duane Chapman, Craig P. Paukert

Sampling techniques for burbot in a western non-wadeable river Sampling techniques for burbot in a western non-wadeable river

Burbot, Lota lota (L.), populations are declining throughout much of their native distribution. Although numerous aspects of burbot ecology are well understood, less is known about effective sampling techniques for burbot in lotic systems. Occupancy models were used to estimate the probability of detection () for three gears (6.4- and 19-mm bar mesh hoop nets, night electric fishing)...
Authors
Z. B. Klein, Michael C. Quist, D.T. Rhea, A. C. Senecal

Restoration of oyster reefs in an estuarine lake: population dynamics and shell accretion Restoration of oyster reefs in an estuarine lake: population dynamics and shell accretion

Restoration activities inherently depend on understanding the spatial and temporal variation in basic demographic rates of the species of interest. For species that modify and maintain their own habitat such as the eastern oyster Crassostrea virginica, understanding demographic rates and their impacts on population and habitat success are crucial to ensuring restoration success. We...
Authors
Sandra M. Casas, Jerome F. La Peyre, Megan La Peyre

Effects of oyster harvest activities on Louisiana reef habitat and resident nekton communities Effects of oyster harvest activities on Louisiana reef habitat and resident nekton communities

Oysters are often cited as “ecosystem engineers” because they modify their environment. Coastal Louisiana contains extensive oyster reef areas that have been harvested for decades, and whether differences in habitat functions exist between those areas and nonharvested reefs is unclear. We compared reef physical structure and resident community metrics between these 2 subtidal reef types...
Authors
Steve Beck, Megan K. LaPeyre

Assessment of general health of fishes collected at selected sites in the Great Lakes Basin In 2012 Assessment of general health of fishes collected at selected sites in the Great Lakes Basin In 2012

During the past decade, there has been a substantive increase in the detection of “emerging contaminants”, defined as a new substance, chemical, or metabolite in the environment; or a legacy substance with a newly expanded distribution, altered release, or a newly recognized effect (such as endocrine disruption). Emerging contaminants include substances such as biogenic hormones (human...
Authors
Patricia M. Mazik, Ryan P. Braham, Cassidy M. Hahn, Vicki Blazer

Elevational gradient in clutch size of Red-faced Warblers Elevational gradient in clutch size of Red-faced Warblers

Our understanding of life history evolution has benefited from debates regarding the underlying causes, and geographic ubiquity, of spatial patterns in avian clutch sizes. Past studies have revealed that birds lay smaller clutch sizes at higher elevation. However, in most previous studies, investigators have failed to adequately control for elevational differences in breeding phenology...
Authors
Kristen G. Dillon, Courtney J. Conway

Looking beyond rare species as umbrella species: Northern Bobwhites (Colinus virginianus) and conservation of grassland and shrubland birds Looking beyond rare species as umbrella species: Northern Bobwhites (Colinus virginianus) and conservation of grassland and shrubland birds

Changes in land use and land cover throughout the eastern half of North America have caused substantial declines in populations of birds that rely on grassland and shrubland vegetation types, including socially and economically important game birds such as the Northern Bobwhite (Colinus virginianus; hereafter bobwhites). As much attention is focused on habitat management and restoration...
Authors
Andrew D. Crosby, R.D. Elmore, David M. Leslie, Rodney E. Will

Trophic ontogeny of fluvial Bull Trout and seasonal predation on Pacific Salmon in a riverine food web Trophic ontogeny of fluvial Bull Trout and seasonal predation on Pacific Salmon in a riverine food web

Bull Trout Salvelinus confluentus are typically top predators in their host ecosystems. The Skagit River in northwestern Washington State contains Bull Trout and Chinook Salmon Oncorhynchus tshawytschapopulations that are among the largest in the Puget Sound region and also contains a regionally large population of steelhead O. mykiss (anadromous Rainbow Trout). All three species are...
Authors
Erin D. Lowery, David A. Beauchamp

Bird species turnover is related to changing predation risk along a vegetation gradient Bird species turnover is related to changing predation risk along a vegetation gradient

Turnover in animal species along vegetation gradients is often assumed to reflect adaptive habitat preferences that are narrower than the full gradient. Specifically, animals may decline in abundance where their reproductive success is low, and these poor-quality locations differ among species. Yet habitat use does not always appear adaptive. The crucial tests of how abundances and...
Authors
Joseph A. LaManna, Amy B. Hemenway, Vanna Boccadori, Thomas E. Martin

Accounting for multiple climate components when estimating climate change exposure and velocity Accounting for multiple climate components when estimating climate change exposure and velocity

The effect of anthropogenic climate change on organisms will likely be related to climate change exposure and velocity at local and regional scales. However, common methods to estimate climate change exposure and velocity ignore important components of climate that are known to affect the ecology and evolution of organisms.We develop a novel index of climate change (climate overlap) that
Authors
Christopher P. Nadeau, Angela K. Fuller

Application of science-based restoration planning to a desert river system Application of science-based restoration planning to a desert river system

Persistence of many desert river species is threatened by a suite of impacts linked to water infrastructure projects that provide human water security where water is scarce. Many desert rivers have undergone regime shifts from spatially and temporally dynamic ecosystems to more stable systems dominated by homogenous physical habitat. Restoration of desert river systems could aid in...
Authors
Brian G. Laub, Justin Jimenez, Phaedra Budy

Effects of the light goose conservation order on non-target waterfowl distribution during spring migration Effects of the light goose conservation order on non-target waterfowl distribution during spring migration

The Light Goose Conservation Order (LGCO) was initiated in 1999 to reduce mid-continent populations of light geese (lesser snow geese Chen caerulescens and Ross's geese C. rossi). However, concern about potential for LGCO activities (i.e. hunting activities) to negatively impact non-target waterfowl species during spring migration in the Rainwater Basin (RWB) of Nebraska prompted agency...
Authors
Andrew J. Dinges, Elisabeth B. Webb, Mark P. Vrtiska
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