Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5350
A guide to Bayesian model selection for ecologists A guide to Bayesian model selection for ecologists
The steady upward trend in the use of model selection and Bayesian methods in ecological research has made it clear that both approaches to inference are important for modern analysis of models and data. However, in teaching Bayesian methods and in working with our research colleagues, we have noticed a general dissatisfaction with the available literature on Bayesian model selection and
Authors
Mevin Hooten, N.T. Hobbs
Using spatiotemporal statistical models to estimate animal abundance and infer ecological dynamics from survey counts Using spatiotemporal statistical models to estimate animal abundance and infer ecological dynamics from survey counts
Ecologists often fit models to survey data to estimate and explain variation in animal abundance. Such models typically require that animal density remains constant across the landscape where sampling is being conducted, a potentially problematic assumption for animals inhabiting dynamic landscapes or otherwise exhibiting considerable spatiotemporal variation in density. We review...
Authors
Paul B. Conn, Devin S. Johnson, Jay M. Ver Hoef, Mevin Hooten, Joshua M. London, Peter L. Boveng
On the existence of maximum likelihood estimates for presence-only data On the existence of maximum likelihood estimates for presence-only data
Presence-only data can be used to determine resource selection and estimate a species’ distribution. Maximum likelihood is a common parameter estimation method used for species distribution models. Maximum likelihood estimates, however, do not always exist for a commonly used species distribution model – the Poisson point process. We demonstrate the issue with conventional maximum...
Authors
Trevor J. Hefley, Mevin Hooten
Epizootiology of cranial abscess disease in white-tailed deer (Odocoileus virginianus) of Georgia, USA Epizootiology of cranial abscess disease in white-tailed deer (Odocoileus virginianus) of Georgia, USA
Intracranial abscess disease is a cause of natural mortality for mature male white-tailed deer (Odocoileus virginianus). Most cases of abscesses are associated with bacterial infection byTrueperella (Arcanobacterium) pyogenes, but a complete understanding of the epidemiology of this disease is lacking. We quantified the effects of individual characteristics, site-specific herd...
Authors
Bradley S. Cohen, Emily H. Belser, Charlie H. Killmaster, John W. Bowers, Brian J. Irwin, Michael J. Yabsley, Karl V. Miller
Effects of climate and plant phenology on recruitment of moose at the southern extent of their range Effects of climate and plant phenology on recruitment of moose at the southern extent of their range
Climate plays a fundamental role in limiting the range of a species, is a key factor in the dynamics of large herbivores, and is thought to be involved in declines of moose populations in recent decades. We examined effects of climate and growing-season phenology on recruitment (8–9 months old) of young Shiras moose (Alces alces shirasi) over three decades, from 18 herds, across a large...
Authors
Kevin L. Monteith, Robert W. Klaver, Kent Hersey, A. Andrew Holland, Timothy P. Thomas, Matthew Kauffman
Evaluation of daily creel and minimum length limits for Black Crappies and Yellow Perch in Wisconsin Evaluation of daily creel and minimum length limits for Black Crappies and Yellow Perch in Wisconsin
Harvest regulations for Black Crappie Pomoxis nigromaculatus and Yellow Perch Perca flavescens in the northern USA and Canada have not been thoroughly evaluated, and specific guidance regarding where minimum length limits (MLLs) might improve these fisheries is lacking. We examined whether: (1) transitioning from an aggregate statewide daily creel limit of 25 panfish to species-specific...
Authors
Kyle Mosel, Daniel A. Isermann, Jonathan F. Hansen
Guidelines for evaluating performance of oyster habitat restoration Guidelines for evaluating performance of oyster habitat restoration
Restoration of degraded ecosystems is an important societal goal, yet inadequate monitoring and the absence of clear performance metrics are common criticisms of many habitat restoration projects. Funding limitations can prevent adequate monitoring, but we suggest that the lack of accepted metrics to address the diversity of restoration objectives also presents a serious challenge to the
Authors
Lesley P. Baggett, Sean P. Powers, Robert D. Brumbaugh, Loren D. Coen, Bryan M. DeAngelis, Jennifer K. Greene, Boze T. Hancock, Summer M. Morlock, Brian L. Allen, Denise L. Breitburg, David Bushek, Jonathan H. Grabowski, Raymond E. Grizzle, Edwin D. Grosholz, Megan K. LaPeyre, Mark W. Luckenbach, Kay A. McGraw, Michael F. Piehler, Stephanie R. Westby, Philine S. E. zu Ermgassen
Life-history tradeoffs and reproductive cycles in Spotted Owls Life-history tradeoffs and reproductive cycles in Spotted Owls
The study of tradeoffs among life-history traits has long been key to understanding the evolution of life-history strategies. However, more recently, evolutionary ecologists have realized that reproductive costs have the potential to influence population dynamics. Here, we tested for costs of reproduction in the California Spotted Owl (Strix occidentalis occidentalis), and assessed...
Authors
Ricka E. Stoelting, R. J. Gutierrez, William L. Kendall, M. Zachariah Peery
Non-lethal assessment of freshwater mussel physiological response to changes in environmental factors Non-lethal assessment of freshwater mussel physiological response to changes in environmental factors
The development of effective nonlethal biomonitoring techniques is imperative for the preservation of imperiled freshwater mussel populations. Changes in hemolymph chemistry profiles and tissue glycogen are potential biomarkers for nonlethally monitoring stress in mussels. We sampled three species in the Flint River Basin over 2 years to evaluate how these hemolymph and tissue biomarkers...
Authors
Andrea K. Fritts, James T. Peterson, Jason M. Wisniewski, Robert B. Bringolf
Breeding habitat associations and predicted distribution of an obligate tundra-breeding bird, Smith's Longspur Breeding habitat associations and predicted distribution of an obligate tundra-breeding bird, Smith's Longspur
Smith's Longspur (Calcarius pictus) is a species of conservation concern which breeds in Arctic habitats that are expected to be especially vulnerable to climate change. We used bird presence and habitat data from point-transect surveys conducted at 12 sites across the Brooks Range, Alaska, 2003–2009, to identify breeding areas, describe local habitat associations, and identify suitable...
Authors
Teri C. Wild, Steven J. Kendall, Nikki Guldager, Abby N. Powell
Patterns of fish assemblage structure and habitat use among main- and side-channel environments in the lower Kootenai River, Idaho Patterns of fish assemblage structure and habitat use among main- and side-channel environments in the lower Kootenai River, Idaho
The lower Kootenai River, Idaho, was sampled during the summers of 2012 and 2013 to evaluate its fish assemblage structure at seven sites within main- and side-channel habitats where large-scale habitat rehabilitation was undertaken. Understanding the current patterns of fish assemblage structure and their relationships with habitat is important for evaluating the effects of past and...
Authors
Carson J. Watkins, Bryan S. Stevens, Michael C. Quist, Bradley B. Shepard, Susan C. Ireland
Population characteristics of channel catfish near the northern edge of their distribution: implications for management Population characteristics of channel catfish near the northern edge of their distribution: implications for management
Channel catfish, Ictalurus punctatus (Rafinesque), populations in six lakes in northern Idaho, USA, were sampled to describe their population characteristics. During the summers of 2011 and 2012, 4864 channel catfish were sampled. Channel catfish populations had low to moderate catch rates, and length structure was dominated by fish
Authors
K. P. Carter-Lynn, Michael C. Quist