Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5185
Assessing landscape constraints on species abundance: Does the neighborhood limit species response to local habitat conservation programs? Assessing landscape constraints on species abundance: Does the neighborhood limit species response to local habitat conservation programs?
Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and...
Authors
Christopher F. Jorgensen, Larkin A. Powell, Jeffrey J. Lusk, Andrew A. Bishop, Joseph J. Fontaine
Size-selective mortality of steelhead during freshwater and marine life stages related to freshwater growth in the Skagit River, Washington Size-selective mortality of steelhead during freshwater and marine life stages related to freshwater growth in the Skagit River, Washington
We evaluated freshwater growth and survival from juvenile (ages 0–3) to smolt (ages 1–5) and adult stages in wild steelhead Oncorhynchus mykiss sampled in different precipitation zones of the Skagit River basin, Washington. Our objectives were to determine whether significant size-selective mortality (SSM) in steelhead could be detected between early and later freshwater stages and...
Authors
Jamie N. Thompson, David A. Beauchamp
Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear
Because human impacts and climate change threaten aquatic ecosystems, a need exists to quantify catchment-scale biodiversity patterns and identify conservation actions that can mitigate adverse human impacts on aquatic biota. Whereas many traditional aquatic resource questions can be answered by repeatedly sampling a few target species with limited types of gear in the same habitats...
Authors
Joseph M. Smith, Sarah P. Wells, Martha E. Mather, Robert M. Muth
Nutrient additions to mitigate for loss of Pacific salmon: consequences for stream biofilm and nutrient dynamics Nutrient additions to mitigate for loss of Pacific salmon: consequences for stream biofilm and nutrient dynamics
Mitigation activities designed to supplement nutrient and organic matter inputs to streams experiencing decline or loss of Pacific salmon typically presuppose that an important pathway by which salmon nutrients are moved to fish (anadromous and/or resident) is via nutrient incorporation by biofilms and subsequent bottom-up stimulation of biofilm production, which is nutrient-limited in...
Authors
Amy M. Marcarelli, Colden V. Baxter, Mark S. Wipfli
Occupancy patterns of regionally declining grassland sparrow populations in a forested Pennsylvania landscape Occupancy patterns of regionally declining grassland sparrow populations in a forested Pennsylvania landscape
Organisms can be affected by processes in the surrounding landscape outside the boundary of habitat areas and by local vegetation characteristics. There is substantial interest in understanding how these processes affect populations of grassland birds, which have experienced substantial population declines. Much of our knowledge regarding patterns of occupancy and density stem from...
Authors
Jason M. Hill, Duane R. Diefenbach
Physiological indices of seawater readiness in postspawning steelhead kelts Physiological indices of seawater readiness in postspawning steelhead kelts
Management goals to improve the recovery of steelhead (Oncorhynchus mykiss) stocks at risk of extinction include increasing the proportion of postspawning fish that survive and spawn again. To be successful, postspawning steelhead (kelts) migrating downstream to the ocean must prepare physiologically and physically for a seawater transition. We sampled blood, gill filaments, and...
Authors
Jessica Buelow, Christine M. Moffitt
Mechanisms of drift-feeding behavior in juvenile Chinook salmon and the role of inedible debris in a clear water Alaskan stream Mechanisms of drift-feeding behavior in juvenile Chinook salmon and the role of inedible debris in a clear water Alaskan stream
Drift-feeding fish are challenged to discriminate between prey and similar-sized particles of debris, which are ubiquitous even in clear-water streams. Spending time and energy pursuing debris mistaken as prey could affect fish growth and the fitness potential of different foraging strategies. Our goal was to determine the extent to which debris influences drift-feeding fish in clear...
Authors
Jason R. Neuswanger, Mark S. Wipfli, Amanda E. Rosenberger, Nicholas F. Hughes
Estimating habitat carrying capacity for migrating and wintering waterfowl: Considerations, pitfalls and improvements Estimating habitat carrying capacity for migrating and wintering waterfowl: Considerations, pitfalls and improvements
Population-based habitat conservation planning for migrating and wintering waterfowl in North America is carried out by habitat Joint Venture (JV) initiatives and is based on the premise that food can limit demography (i.e. food limitation hypothesis). Consequently, planners use bioenergetic models to estimate food (energy) availability and population-level energy demands at appropriate...
Authors
Christopher Williams, Bruce D. Dugger, Michael G. Brasher, John M. Coluccy, Dane M. Cramer, John M. Eadie, Matthew J. Gray, Heath M. Hagy, Mark Livolsi, Scott R. McWilliams, Matthew Petrie, Gregory J. Soulliere, John M. Tirpak, Elisabeth B. Webb
Lipid and moisture content modeling of amphidromous Dolly Varden using bioelectrical impedance analysis Lipid and moisture content modeling of amphidromous Dolly Varden using bioelectrical impedance analysis
The physiological well-being or condition of fish is most commonly estimated from aspects of individual morphology. However, these metrics may be only weakly correlated with nutritional reserves stored as lipid, the primary form of accumulated energy in fish. We constructed and evaluated bioelectrical impedance analysis (BIA) models as an alternative method of assessing condition in...
Authors
J.T. Stolarski, F.J. Margraf, J.G. Carlson, T.M. Sutton
Reducing bias in survival under non-random temporary emigration Reducing bias in survival under non-random temporary emigration
Despite intensive monitoring, temporary emigration from the sampling area can induce bias severe enough for managers to discard life-history parameter estimates toward the terminus of the times series (terminal bias). Under random temporary emigration unbiased parameters can be estimated with CJS models. However, unmodeled Markovian temporary emigration causes bias in parameter estimates...
Authors
Claudia L. Peñaloza, William L. Kendall, Catherine Ann Langtimm
Effects of smallmouth buffalo, Ictiobus bubalus biomass on water transparency, nutrients, and productivity in shallow experimental ponds Effects of smallmouth buffalo, Ictiobus bubalus biomass on water transparency, nutrients, and productivity in shallow experimental ponds
The smallmouth buffalo Ictiobus bubalus is a native benthivore to floodplain lakes in the Yazoo River Basin, USA. Based on evidence from other benthivorous fish studies we hypothesized high biomasses of I. bubalus contribute to poor water quality conditions. We tested this hypothesis in shallow ( 1.5 m) 0.05 ha earthen ponds at three stocking biomasses over a 10-week period during the...
Authors
Daniel B. Goetz, Robert Kroger, Leandro E. Miranda
Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation
Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears (Ursus americanus) were nearly extirpated from the...
Authors
Emily E. Puckett, Thea V. Kristensen, Clay M. Wilton, Sara B. Lyda, Karen V. Noyce, Paula M. Holahan, David M. Leslie, J. Beringer, Jerrold L. Belant, D. White, Lori S. Eggert