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Publications

Dive into our publications and explore the science from the Environmental Health Program (Toxic Substances Hydrology and Contaminant Biology).

Filter Total Items: 4097

Growth of strain SES-3 with arsenate and other diverse electron acceptors Growth of strain SES-3 with arsenate and other diverse electron acceptors

The selenate-respiring bacterial strain SES-3 was able to use a variety of inorganic electron acceptors to sustain growth. SES-3 grew with the reduction of arsenate to arsenite, Fe(III) to Fe(II), or thiosulfate to sulfide. It also grew in medium in which elemental sulfur, Mn(IV), nitrite, trimethylamine N-oxide, or fumarate was provided as an electron acceptor. Growth on oxygen was
Authors
A.M. Laverman, J.S. Blum, J.K. Schaefer, Elizabeth J.P. Phillips, Derek R. Lovley, R.S. Oremland

Fluxes of water and solute in a coastal wetland sediment. l. The contribution of regional groundwater discharge Fluxes of water and solute in a coastal wetland sediment. l. The contribution of regional groundwater discharge

Upward discharge of fresh groundwater into a mid-Atlantic intertidal wetland contributed 62% of the water needed to replace evapotranspiration losses from the sediment during an 11 day period in September. Infiltration during flooding by tides provided most of the balance; thus there was a net advection of salt into the sediment. The amount of groundwater discharge was estimated from...
Authors
William K. Nuttle, Judson W. Harvey

Molecular and isotopic tracers used to examine sources of organic matter and its incorporation into the food webs of San Francisco Bay Molecular and isotopic tracers used to examine sources of organic matter and its incorporation into the food webs of San Francisco Bay

Multiple indicators (Chl a, C : N ratios, [δ13C]POC, and two classes of lipid biomarker compounds- sterols and phospholipid ester-linked fatty acids) were used to evaluate spatial and temporal variations in the origin of particulate organic matter (POM) in the San Francisco Bay (SFB) estuary. Comparisons were made between the northern and southern subestuaries of SFB, as well as along...
Authors
Elizabeth A. Canuel, James E. Cloern, David B. Ringelberg, James B. Guckert, Greg H. Rau

A computer model of long-term salinity in San Francisco Bay: Sensitivity to mixing and inflows A computer model of long-term salinity in San Francisco Bay: Sensitivity to mixing and inflows

A two-level model of the residual circulation and tidally-averaged salinity in San Francisco Bay has been developed in order to interpret long-term (days to decades) salinity variability in the Bay. Applications of the model to biogeochemical studies are also envisaged. The model has been used to simulate daily-averaged salinity in the upper and lower levels of a 51-segment...
Authors
R.J. Uncles, D. H. Peterson

Mercury cycling in the Allequash Creek watershed, northern Wisconsin Mercury cycling in the Allequash Creek watershed, northern Wisconsin

Although there have been recent significant gains in our understanding of mercury (Hg) cycling in aquatic environments, few studies have addressed Hg cycling on a watershed scale in particular, attention to Hg species transfer between watershed components (upland soils, groundwater, wetlands, streams, and lakes) has been lacking. This study describes spatial and temporal distributions of...
Authors
D. P. Krabbenhoft, J.M. Benoit, Christopher L. Babiarz, J.P. Hurley, A.W. Andren

User's guide to PHREEQC, a computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations User's guide to PHREEQC, a computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations

PHREEQC is a computer program written in the C programming language that is designed to perform a wide variety of aqueous geochemical calculations. PHREEQC is based on an ion-association aqueous model and has capabilities for (1) speciation and saturation-index calculations, (2) reaction-path and advective-transport calculations involving specified irreversible reactions, mixing of...
Authors
D.L. Parkhurst

Determination of water retention in stratified porous materials Determination of water retention in stratified porous materials

Predicted and measured water-retention values,θ(ψ), were compared for repacked, stratified core samples consisting of either a sand with a stone-bearing layer or a sand with a clay loam layer in various spatial orientations. Stratified core samples were packed in submersible pressure outflow cells, then water-retention measurements were performed between matric potentials,ψ, of 0 to -100...
Authors
J. Constantz

Year-to-year fluctuation of the spring phytoplankton bloom in south San Francisco Bay: An example of ecological variability at the land-sea interface Year-to-year fluctuation of the spring phytoplankton bloom in south San Francisco Bay: An example of ecological variability at the land-sea interface

Estuaries are transitional ecosystems at the interface of the terrestrial and marine realms. Their unique physiographic position gives rise to large spatial variability, and to dynamic temporal variability resulting, in part, from a variety of forces and fluxes at the oceanic and terrestrial boundaries. River flow, in particular, is an important mechanism for delivering watershed-derived...
Authors
James E. Cloern, Alan D. Jassby

Fluxes of water and solute in a coastal wetland sediment. 2. Effect of macropores on solute exchange with surface water Fluxes of water and solute in a coastal wetland sediment. 2. Effect of macropores on solute exchange with surface water

Chloride was highly concentrated relative to seawater in matrix porewater but was comparatively dilute in macropores. Concentration differences in pore-size classes declined with depth until indistinguishable below 10 cm. The segregated chloride distribution can be explained if recharge to the sediment occurred by downward infiltration in macropores and discharge occurred by an upward...
Authors
J. W. Harvey, W.K. Nuttle

Mantle helium in ground waters of eastern North America: Time and space constraints on sources Mantle helium in ground waters of eastern North America: Time and space constraints on sources

Mantle helium in continental environments is generally considered to be the result of active volcanism and/or active extension. The latest episodes of volcanism in northeastern North America are the track of the New England hotspot (95–190 Ma) and the closure of the Iapetus sea (before 300 Ma). Thus, the identification of mantle helium in young ground waters of central New England is...
Authors
T. Torgersen, S. Drenkard, M. Stute, P. Schlosser, A. Shapiro

Fate, bioavailability and toxicity of silver in estuarine environments Fate, bioavailability and toxicity of silver in estuarine environments

The chemistry and bioavailability of Ag contribute to its high toxicity in marine and estuarine waters. Silver is unusual, in that both the dominant speciation reaction in seawater and the processes important in sorbing Ag in sediments favour enhanced bioavailability. Formation of a stable chloro complex favours dispersal of dissolved Ag, and the abundant chloro complex is available to...
Authors
S. N. Luoma, Y.B. Ho, G.W. Bryan
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