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Comparing and improving methods for reconstructing peatland water-table depth from testate amoebae

October 19, 2019

Proxies that use changes in the composition of ecological communities to reconstruct temporal changes in an environmental covariate are commonly used in paleoclimatology and paleolimnology. Existing methods, such as weighted averaging and modern analog technique,
relate compositional data to the covariate in very simple ways, and different methods are seldom compared systematically. We present a new Bayesian model that better represents the underlying data and the complexity in the relationships between species’ abundances and a paleoenvironmental covariate. Using testate amoeba-based reconstructions of water-table depth as a test case, we systematically compare new and existing models in a cross-validation experiment on a large training dataset from North America. We then apply the different
models to a new 7500-year record of testate amoeba assemblages from Caribou Bog in Maine and compare the resulting water-table depth reconstructions. We find that Bayesian models represent an improvement over existing methods in three key ways: more complete use of the underlying compositional data, full and meaningful treatment of uncertainty, and clear paths toward methodological improvements. Furthermore, we highlight how developing and systematically comparing methods leads to an improved understanding of the proxy system.
This paper focuses on testate amoebae and water-table depth, but the framework and ideas are widely applicable to other proxies based on compositional data.

Publication Year 2019
Title Comparing and improving methods for reconstructing peatland water-table depth from testate amoebae
DOI 10.1177/0959683619846969
Authors Connor Nolan, John Tipton, Robert K. Booth, Mevin Hooten, Stephen Jackson
Publication Type Article
Publication Subtype Journal Article
Series Title Holocene
Index ID 70215416
Record Source USGS Publications Warehouse
USGS Organization Coop Res Unit Seattle