Clint Muhlfeld, Ph.D.
I am a Research Aquatic Ecologist at the USGS Northern Rocky Mountain Science Center (NOROCK) in West Glacier, Montana. I currently serve as the Acting Center Director of NOROCK in Bozeman, Montana.
Research interests
As a Research Aquatic Ecologist, I study the ecology, evolution, and conservation of freshwater species and ecosystems. My research examines how climate variability, hydrologic change, biological invasions, and habitat alteration influence freshwater biodiversity and ecosystem processes, with particular expertise in cold-water biota. I have led ecological and evolutionary studies across freshwater systems ranging from glacier-fed mountain streams and large river networks to lakes, as well as regional and global assessments of trout and char. My research combines long-term ecological studies, field research, genetics, and quantitative modeling and draws on multiple disciplines, including ecology, fisheries science, genetics, and hydrology.
Education and Certifications
Ph.D. 2008. Fish and Wildlife Biology, Montana State University, Bozeman
M.S. 1999. Fishery Resources, University of Idaho, Moscow
B.S. 1994. Aquatic Biology, University of Montana, Missoula; University of Maine, Orono
Science and Products
Filter Total Items: 24
Filter Total Items: 96
Consistent compensatory growth offsets poor condition in trout populations Consistent compensatory growth offsets poor condition in trout populations
1. Compensatory growth – when individuals in poor condition grow rapidly to “catch up” to conspecifics – may be a mechanism that allows individuals to tolerate stressful environmental conditions, both abiotic and biotic. This phenomenon has been documented fairly widely in laboratory and field experiments, but evidence for compensatory growth in the wild is scarce. 2. Cutthroat trout
Authors
Robert Al-Chokhachy, Ryan Kovach, Adam J. Sepulveda, Jeff Strait, Bradley B. Shepard, Clint C. Muhlfeld
Microbial assemblages reflect environmental heterogeneity in alpine streams Microbial assemblages reflect environmental heterogeneity in alpine streams
Alpine streams are dynamic habitats harboring substantial biodiversity across small spatial extents. The diversity of alpine stream biota is largely reflective of environmental heterogeneity stemming from varying hydrological sources. Globally, alpine stream diversity is under threat as meltwater sources recede and stream conditions become increasingly homogeneous. Much attention has...
Authors
Scott Hotaling, Mary E. Foley, Lydia Zeglin, Debra S. Finn, Lusha M. Tronstad, J. Joseph Giersch, Clint C. Muhlfeld, David W. Weisrock
An integrated framework for ecological drought across riverscapes of North America An integrated framework for ecological drought across riverscapes of North America
Climate change is increasing the severity and extent of extreme droughts events, posing a critical threat to freshwater ecosystems, particularly with increasing human demands for diminishing water supplies. Despite the importance of drought as a significant driver of ecological and evolutionary dynamics, current understanding of drought consequences for freshwater biodiversity is very...
Authors
Ryan Kovach, Jason B. Dunham, Robert Al-Chokhachy, Craig Snyder, Erik A. Beever, Gregory T. Pederson, Abigail J. Lynch, Nathaniel P. Hitt, Christopher P. Konrad, Kristin L. Jaeger, Alan H. Rea, Adam J. Sepulveda, Patrick M. Lambert, Jason M. Stoker, J. Joseph Giersch, Clint C. Muhlfeld
Challenges in Columbia River fisheries conservation: Response to Duda et al. Challenges in Columbia River fisheries conservation: Response to Duda et al.
The salmonid fisheries of the Columbia River Basin (CRB) have enormous socioeconomic, cultural, and ecological importance to numerous diverse stakeholders (e.g., state, federal, tribal, nonprofit), and there are a wide array of opinions and perspectives on how these fisheries should be managed. Although we appreciate Duda et al.’s commentary, it offers only one perspective of many in...
Authors
Brian K. Hand, Courtney G. Flint, Chris A. Frissell, Clint C. Muhlfeld, Shawn P. Devlin, Brian P. Kennedy, Robert L. Crabtree, Arthur McKee, Gordon Luikart, Jack A. Stanford
Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions
Comparative population genetic studies provide a powerful means for assessing the degree to which evolutionary histories may be congruent among taxa while also highlighting the potential for cryptic diversity within existing species.In the Rocky Mountains, three confamilial stoneflies (Zapada glacier , Lednia tumana , and Lednia tetonica ; Plecoptera, Nemouridae) occupy cold alpine...
Authors
Scott Hotaling, J. Joseph Giersch, Debra S. Finn, Lusha M. Tronstad, Steve Jordan, Larry Serpa, Ronald Call, Clint C. Muhlfeld, David W. Weisrock
Effects of land use on summer thermal regimes in critical salmonid habitats of the Pacific Northwest Effects of land use on summer thermal regimes in critical salmonid habitats of the Pacific Northwest
The effect of climate change on stream temperature regimes is of significant concern to natural resource managers focused on protecting cold-water-dependent species. Nevertheless, understanding of how human land-use activities may act to exacerbate the effects of climate change on stream temperature regimes is limited. Using extensive stream temperature data with high-resolution climate...
Authors
Ryan Kovach, Clint C. Muhlfeld, Robert Al-Chokhachy, Jeffrey V. Ojala, Eric Archer
Trout in hot water: A call for global action Trout in hot water: A call for global action
Trout are one of the most culturally, economically, and ecologically important taxonomic groups of freshwater fishes worldwide (1). Native to all continents in the Northern Hemisphere, trout are a taxonomically diverse group of fishes belonging to 7 genera (Oncorhynchus, Salvelinus, Salmo, Hucho, Parahucho, Brachymystax, and Salvethymus) distributed across 52 countries. These coldwater...
Authors
Clint C. Muhlfeld, Daniel C. Dauwalter, Ryan Kovach, Jeffrey L. Kershner, Jack E. Williams, John Epifanio
Long-term population dynamics and conservation risk of migratory bull trout in the upper Columbia River basin Long-term population dynamics and conservation risk of migratory bull trout in the upper Columbia River basin
We used redd count data from 88 bull trout (Salvelinus confluentus) populations in the upper Columbia River basin to quantify local and regional patterns in population dynamics, including adult abundance, long-term trend, and population synchrony. We further used this information to assess conservation risk of metapopulations using eight population dynamic metrics associated with...
Authors
Ryan Kovach, Jonathan Armstrong, David Schmetterling, Robert Al-Chokhachy, Clint C. Muhlfeld
Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape
Aim Climate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and demographic modelling to...
Authors
Scott Hotaling, Clint C. Muhlfeld, J. Joseph Giersch, Omar Ali, Steve Jordan, Michael R. Miller, Gordon Luikart, David W. Weisrock
A social–ecological perspective for riverscape management in the Columbia River Basin A social–ecological perspective for riverscape management in the Columbia River Basin
Riverscapes are complex, landscape-scale mosaics of connected river and stream habitats embedded in diverse ecological and socioeconomic settings. Social–ecological interactions among stakeholders often complicate natural-resource conservation and management of riverscapes. The management challenges posed by the conservation and restoration of wild salmonid populations in the Columbia...
Authors
Brian K. Hand, Courtney G. Flint, Chris A. Frissell, Clint C. Muhlfeld, Shawn P. Devlin, Brian P. Kennedy, Robert L. Crabtree, W. Arthur McKee, Gordon Luikart, Jack A. Stanford
Projected warming portends seasonal shifts of stream temperatures in the Crown of the Continent Ecosystem, USA and Canada Projected warming portends seasonal shifts of stream temperatures in the Crown of the Continent Ecosystem, USA and Canada
Climate warming is expected to increase stream temperatures in mountainous regions of western North America, yet the degree to which future climate change may influence seasonal patterns of stream temperature is uncertain. In this study, a spatially explicit statistical model framework was integrated with empirical stream temperature data (approximately four million bi-hourly recordings)...
Authors
Leslie A. Jones, Clint C. Muhlfeld, Lucy A. Marshall
No evidence for ecological segregation protecting native trout from invasive hybridization No evidence for ecological segregation protecting native trout from invasive hybridization
We appreciate the comments of Young et al. (2017) on our recent paper (Muhlfeld et al., 2017) concerning spatiotemporal dynamics of hybridization between native westslope cutthroat trout (Oncorhynchus clarkii lewisi; WCT) and introduced coastal rainbow trout (Oncorhynchus mykiss irideus; RBT). Nevertheless, we believe there is no evidence for “ecological segregation” protecting WCT from
Authors
Ryan Kovach, Clint C. Muhlfeld, Robert K. Al-Chokhachy, Stephen J. Amish, Jeffrey L. Kershner, Robb F. Leary, Winsor H. Lowe, Gordon Luikart, Phil Matson, David Schmetterling, Bradley Shepard, Peter A. H. Westley, Diane Whited, Andrew R. Whiteley, Fred W. Allendorf
Non-USGS Publications**
Muhlfeld, Clint C., Thomas E. McMahon, and Durae Belcer. 2009. Spatial and temporal dynamics of spawning between native westslope cutthroat trout (Oncorhynchus clarkii lewisi), introduced rainbow trout (O. mykiss), and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 66:1153-1168.
Muhlfeld, Clint C., Thomas E. McMahon, Matthew C. Boyer, and Robert E. Gresswell. 2009. Local-habitat, watershed, and biotic factors in the spread of hybridization between native westslope cutthroat trout and introduced rainbow trout. Transactions of the American Fisheries Society 138:1036-1051.
Boyer, Matthew C., Clint C. Muhlfeld, and Fred Allendorf. 2008. Rainbow trout invasion and the spread of hybridization with westslope cutthroat trout. Canadian Journal of Fisheries and Aquatic Sciences 65:658-669.
Muhlfeld, Clint C., David H. Bennett, Kirk Steinhorst, Brian Marotz, and Matthew C. Boyer. 2008. Using bioenergetics modeling to estimate consumption of native juvenile salmonids by nonnative northern pike in the upper Flathead River system, Montana. North American Journal of Fisheries Management 28:636-648.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Science and Products
Filter Total Items: 24
Filter Total Items: 96
Consistent compensatory growth offsets poor condition in trout populations Consistent compensatory growth offsets poor condition in trout populations
1. Compensatory growth – when individuals in poor condition grow rapidly to “catch up” to conspecifics – may be a mechanism that allows individuals to tolerate stressful environmental conditions, both abiotic and biotic. This phenomenon has been documented fairly widely in laboratory and field experiments, but evidence for compensatory growth in the wild is scarce. 2. Cutthroat trout
Authors
Robert Al-Chokhachy, Ryan Kovach, Adam J. Sepulveda, Jeff Strait, Bradley B. Shepard, Clint C. Muhlfeld
Microbial assemblages reflect environmental heterogeneity in alpine streams Microbial assemblages reflect environmental heterogeneity in alpine streams
Alpine streams are dynamic habitats harboring substantial biodiversity across small spatial extents. The diversity of alpine stream biota is largely reflective of environmental heterogeneity stemming from varying hydrological sources. Globally, alpine stream diversity is under threat as meltwater sources recede and stream conditions become increasingly homogeneous. Much attention has...
Authors
Scott Hotaling, Mary E. Foley, Lydia Zeglin, Debra S. Finn, Lusha M. Tronstad, J. Joseph Giersch, Clint C. Muhlfeld, David W. Weisrock
An integrated framework for ecological drought across riverscapes of North America An integrated framework for ecological drought across riverscapes of North America
Climate change is increasing the severity and extent of extreme droughts events, posing a critical threat to freshwater ecosystems, particularly with increasing human demands for diminishing water supplies. Despite the importance of drought as a significant driver of ecological and evolutionary dynamics, current understanding of drought consequences for freshwater biodiversity is very...
Authors
Ryan Kovach, Jason B. Dunham, Robert Al-Chokhachy, Craig Snyder, Erik A. Beever, Gregory T. Pederson, Abigail J. Lynch, Nathaniel P. Hitt, Christopher P. Konrad, Kristin L. Jaeger, Alan H. Rea, Adam J. Sepulveda, Patrick M. Lambert, Jason M. Stoker, J. Joseph Giersch, Clint C. Muhlfeld
Challenges in Columbia River fisheries conservation: Response to Duda et al. Challenges in Columbia River fisheries conservation: Response to Duda et al.
The salmonid fisheries of the Columbia River Basin (CRB) have enormous socioeconomic, cultural, and ecological importance to numerous diverse stakeholders (e.g., state, federal, tribal, nonprofit), and there are a wide array of opinions and perspectives on how these fisheries should be managed. Although we appreciate Duda et al.’s commentary, it offers only one perspective of many in...
Authors
Brian K. Hand, Courtney G. Flint, Chris A. Frissell, Clint C. Muhlfeld, Shawn P. Devlin, Brian P. Kennedy, Robert L. Crabtree, Arthur McKee, Gordon Luikart, Jack A. Stanford
Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions
Comparative population genetic studies provide a powerful means for assessing the degree to which evolutionary histories may be congruent among taxa while also highlighting the potential for cryptic diversity within existing species.In the Rocky Mountains, three confamilial stoneflies (Zapada glacier , Lednia tumana , and Lednia tetonica ; Plecoptera, Nemouridae) occupy cold alpine...
Authors
Scott Hotaling, J. Joseph Giersch, Debra S. Finn, Lusha M. Tronstad, Steve Jordan, Larry Serpa, Ronald Call, Clint C. Muhlfeld, David W. Weisrock
Effects of land use on summer thermal regimes in critical salmonid habitats of the Pacific Northwest Effects of land use on summer thermal regimes in critical salmonid habitats of the Pacific Northwest
The effect of climate change on stream temperature regimes is of significant concern to natural resource managers focused on protecting cold-water-dependent species. Nevertheless, understanding of how human land-use activities may act to exacerbate the effects of climate change on stream temperature regimes is limited. Using extensive stream temperature data with high-resolution climate...
Authors
Ryan Kovach, Clint C. Muhlfeld, Robert Al-Chokhachy, Jeffrey V. Ojala, Eric Archer
Trout in hot water: A call for global action Trout in hot water: A call for global action
Trout are one of the most culturally, economically, and ecologically important taxonomic groups of freshwater fishes worldwide (1). Native to all continents in the Northern Hemisphere, trout are a taxonomically diverse group of fishes belonging to 7 genera (Oncorhynchus, Salvelinus, Salmo, Hucho, Parahucho, Brachymystax, and Salvethymus) distributed across 52 countries. These coldwater...
Authors
Clint C. Muhlfeld, Daniel C. Dauwalter, Ryan Kovach, Jeffrey L. Kershner, Jack E. Williams, John Epifanio
Long-term population dynamics and conservation risk of migratory bull trout in the upper Columbia River basin Long-term population dynamics and conservation risk of migratory bull trout in the upper Columbia River basin
We used redd count data from 88 bull trout (Salvelinus confluentus) populations in the upper Columbia River basin to quantify local and regional patterns in population dynamics, including adult abundance, long-term trend, and population synchrony. We further used this information to assess conservation risk of metapopulations using eight population dynamic metrics associated with...
Authors
Ryan Kovach, Jonathan Armstrong, David Schmetterling, Robert Al-Chokhachy, Clint C. Muhlfeld
Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape
Aim Climate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and demographic modelling to...
Authors
Scott Hotaling, Clint C. Muhlfeld, J. Joseph Giersch, Omar Ali, Steve Jordan, Michael R. Miller, Gordon Luikart, David W. Weisrock
A social–ecological perspective for riverscape management in the Columbia River Basin A social–ecological perspective for riverscape management in the Columbia River Basin
Riverscapes are complex, landscape-scale mosaics of connected river and stream habitats embedded in diverse ecological and socioeconomic settings. Social–ecological interactions among stakeholders often complicate natural-resource conservation and management of riverscapes. The management challenges posed by the conservation and restoration of wild salmonid populations in the Columbia...
Authors
Brian K. Hand, Courtney G. Flint, Chris A. Frissell, Clint C. Muhlfeld, Shawn P. Devlin, Brian P. Kennedy, Robert L. Crabtree, W. Arthur McKee, Gordon Luikart, Jack A. Stanford
Projected warming portends seasonal shifts of stream temperatures in the Crown of the Continent Ecosystem, USA and Canada Projected warming portends seasonal shifts of stream temperatures in the Crown of the Continent Ecosystem, USA and Canada
Climate warming is expected to increase stream temperatures in mountainous regions of western North America, yet the degree to which future climate change may influence seasonal patterns of stream temperature is uncertain. In this study, a spatially explicit statistical model framework was integrated with empirical stream temperature data (approximately four million bi-hourly recordings)...
Authors
Leslie A. Jones, Clint C. Muhlfeld, Lucy A. Marshall
No evidence for ecological segregation protecting native trout from invasive hybridization No evidence for ecological segregation protecting native trout from invasive hybridization
We appreciate the comments of Young et al. (2017) on our recent paper (Muhlfeld et al., 2017) concerning spatiotemporal dynamics of hybridization between native westslope cutthroat trout (Oncorhynchus clarkii lewisi; WCT) and introduced coastal rainbow trout (Oncorhynchus mykiss irideus; RBT). Nevertheless, we believe there is no evidence for “ecological segregation” protecting WCT from
Authors
Ryan Kovach, Clint C. Muhlfeld, Robert K. Al-Chokhachy, Stephen J. Amish, Jeffrey L. Kershner, Robb F. Leary, Winsor H. Lowe, Gordon Luikart, Phil Matson, David Schmetterling, Bradley Shepard, Peter A. H. Westley, Diane Whited, Andrew R. Whiteley, Fred W. Allendorf
Non-USGS Publications**
Muhlfeld, Clint C., Thomas E. McMahon, and Durae Belcer. 2009. Spatial and temporal dynamics of spawning between native westslope cutthroat trout (Oncorhynchus clarkii lewisi), introduced rainbow trout (O. mykiss), and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 66:1153-1168.
Muhlfeld, Clint C., Thomas E. McMahon, Matthew C. Boyer, and Robert E. Gresswell. 2009. Local-habitat, watershed, and biotic factors in the spread of hybridization between native westslope cutthroat trout and introduced rainbow trout. Transactions of the American Fisheries Society 138:1036-1051.
Boyer, Matthew C., Clint C. Muhlfeld, and Fred Allendorf. 2008. Rainbow trout invasion and the spread of hybridization with westslope cutthroat trout. Canadian Journal of Fisheries and Aquatic Sciences 65:658-669.
Muhlfeld, Clint C., David H. Bennett, Kirk Steinhorst, Brian Marotz, and Matthew C. Boyer. 2008. Using bioenergetics modeling to estimate consumption of native juvenile salmonids by nonnative northern pike in the upper Flathead River system, Montana. North American Journal of Fisheries Management 28:636-648.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.