Jim Hines develops software for the analysis of animal population dynamics and management.
- B.S. University of Maryland, Mathematics, 1979.
Science and Products
Biologists at USGS Patuxent, as well as cooperating agencies are constantly looking for new ways of answering questions about the status of animal populations and how animal populations change over time. To address these questions, data are collected on captures and or sightings of animals which can be used to estimate parameters which affect the population using legacy software. Over time,...
Occupancy in community-level studies
Another type of multi-species studies, are those focused on community-level metrics such as species richness. In this chapter we detail how some of the single-species occupancy models described in earlier chapters have been applied, or extended, for use in such studies, while accounting for imperfect detection. We highlight how Bayesian methods...MacKenzie, Darryl I.; Nichols, James D.; Royle, Andy; Pollock, Kenneth H.; Bailey, Larissa L.; Hines, James
Are ranger patrols effective in reducing poaching-related threats within protected areas?
Poaching is one of the greatest threats to wildlife conservation world-wide. However, the spatial and temporal patterns of poaching activities within protected areas, and the effectiveness of ranger patrols and ranger posts in mitigating these threats, are relatively unknown.We used 10 years (2006–2015) of ranger-based monitoring data and...Moore, Jennnifer F.; Mulindahabi, Felix; Masozera, Michel K.; Nichols, James D.; Hines, James; Turikunkiko, Ezechiel; Oli, Madan K.
Territory occupancy and breeding success of Peregrine Falcons Falco peregrinus at various stages of population recovery
Organochlorine pesticides disrupted reproduction and killed many raptorial birds, and contributed to population declines during the 1940s to 1970s. We sought to discern whether and to what extent territory occupancy and breeding success changed from the pesticide era to recent years in a resident population of Peregrine Falcons Falco peregrinus in...McGrady, Michael J.; Hines, James; Rollie, Chris; Smith, George D.; Morton, Elise R.; Moore, Jennifer F.; Mearns, Richard M.; Newton, Ian; Murillo-Garcia, Oscar E.; Oli, Madan K.
Evaluation of nutria (Myocastor coypus) detection methods in Maryland, USA
Nutria (Myocaster coypus), invasive, semi-aquatic rodents native to South America, were introduced into Maryland near Blackwater National Wildlife Refuge (BNWR) in 1943. Irruptive population growth, expansion, and destructive feeding habits resulted in the destruction of thousands of acres of emergent marshes at and surrounding BNWR. In 2002, a...Pepper, Margaret A.; Herrmann, Valentine; Hines, James; Nichols, James D.; Kendrot, Stephen R
The North American Breeding Bird Survey, results and analysis 1966 - 2015
This website presents population change information for more than 400 species of North American birds, as estimated from the North American Breeding Bird Survey. Estimates of trend (interval-specific estimates of population change), annual indices of abundance, and maps of abundance and population change for these species are presented for a...Sauer, John; Niven, Daniel; Hines, James; Ziolkowski, David; Pardieck, Keith L.; Fallon, J.E.; Link, William
Roseate Tern breeding dispersal and fidelity: Responses to two newly restored colony sites
We used 22 yr of capture–mark–reencounter (CMR) data collected from 1988 to 2009 on about 12,500 birds at what went from three to five coastal colony sites in Massachusetts, New York, and Connecticut, United States, to examine spatial and temporal variation in breeding dispersal/fidelity rates of adult Roseate Terns (Sterna dougallii). At the...Spendelow, Jeffrey A.; Monticelli, David; Nichols, James D.; Hines, James; Nisbet, Ian; Cormons, Grace; Hays, Helen; Hatch, Jeremy; Mostello, Carolyn
Estimating indices of range shifts in birds using dynamic models when detection is imperfect
There is intense interest in basic and applied ecology about the effect of global change on current and future species distributions. Projections based on widely used static modeling methods implicitly assume that species are in equilibrium with the environment and that detection during surveys is perfect. We used multiseason correlated detection...Clement, Matthew J.; Hines, James E.; Nichols, James D.; Pardieck, Keith L.; Ziolkowski, David J.
The effects of habitat, climate, and Barred Owls on long-term demography of Northern Spotted Owls
Estimates of species' vital rates and an understanding of the factors affecting those parameters over time and space can provide crucial information for management and conservation. We used mark–recapture, reproductive output, and territory occupancy data collected during 1985–2013 to evaluate population processes of Northern Spotted...Dugger, Catherine; Forsman, Eric D.; Franklin, Alan B.; Davis, Raymond J.; White, Gary C.; Schwarz, Carl J.; Burnham, Kenneth P.; Nichols, James D.; Hines, James E.; Yackulic, Charles B.; Doherty, Paul F.; Bailey, Larissa; Clark, Darren A.; Ackers, Steven H.; Andrews, Lawrence S.; Augustine, Benjamin; Biswell, Brian L.; Blakesley, Jennifer; Carlson, Peter C.; Clement, Matthew J.; Diller, Lowell V.; Glenn, Elizabeth M.; Green, Adam; Gremel, Scott A.; Herter, Dale R.; Higley, J. Mark; Hobson, Jeremy; Horn, Rob B.; Huyvaert, Kathryn P.; McCafferty, Christopher; McDonald, Trent; McDonnell, Kevin; Olson, Gail S.; Reid, Janice A.; Rockweit, Jeremy; Ruiz, Viviana; Saenz, Jessica; Sovern, Stan G.
Heterogeneous movement of insectivorous Amazonian birds through primary and secondary forest: A case study using multistate models with radiotelemetry data
Given rates of deforestation, disturbance, and secondary forest accumulation in tropical rainforests, there is a great need to quantify habitat use and movement among different habitats. This need is particularly pronounced for animals most sensitive to disturbance, such as insectivorous understory birds. Here we use multistate capture–...Hines, James; Powell, Luke L.; Wolfe, Jared D.; Johnson, Erik l.; Nichols, James D.; Stouffer, Phillip C.
Status assessment of the Endangered snow leopard Panthera uncia and other large mammals in the Kyrgyz Alay, using community knowledge corrected for imperfect detection
The Endangered snow leopard Panthera uncia occurs in the Central Asian Mountains, which cover c. 2 million km2. Little is known about its status in the Kyrgyz Alay Mountains, a relatively narrow stretch of habitat connecting the southern and northern global ranges of the species. In 2010 we gathered information on current and past (1990, the last...Taubmann, Julia; Sharma, Koustubh; Uulu, Kubanychbek Zhumabai; Hines, James; Mishra, Charudutt
Age-specific survival of male golden-cheeked warblers on the Fort Hood Military Reservation, Texas
Population models are essential components of large-scale conservation and management plans for the federally endangered Golden-cheeked Warbler (Setophaga chrysoparia; hereafter GCWA). However, existing models are based on vital rate estimates calculated using relatively small data sets that are now more than a decade old. We estimated more...Duarte, Adam; Hines, James E.; Nichols, James D.; Hatfield, Jeffrey S.; Weckerly, Floyd W.
Multiseason occupancy models for correlated replicate surveys
Occupancy surveys collecting data from adjacent (sometimes correlated) spatial replicates have become relatively popular for logistical reasons. Hines et al. (2010) presented one approach to modelling such data for single-season occupancy surveys. Here, we present a multiseason analogue of this model (with corresponding software) for...Hines, James; Nichols, James D.; Collazo, Jaime
An R package to estimate nest abundance using a state-space superpopulation capture-recapture approach in which inference about detection proability is based on the age at first detection, as opposed to the sequence of re-detections in standard capture-recapture models.