Matthew Neilson, Ph.D.
My interests lie in the ecology, biology, systematics, population genetics, and zoogeography of fishes. I currently work with the USGS Nonindigenous Aquatic Species Database program helping to refine our understanding of nonnative fish distributions and impacts in the United States.
Science and Products
Filter Total Items: 14
The Nonindigenous Aquatic Species Alert Risk Mapper (ARM)
The Nonindigenous Aquatic Species (NAS) program has developed a new tool, the NAS Alert Risk Mapper (ARM), to characterize waterbodies in the conterminous U.S. and Hawaii at potential risk of invasion from a new nonindigenous species sighting.
Defining Native Ranges of U.S. Inland Fishes
Understanding the native versus non-native range of a species can provide useful information about dispersal, population distribution patterns, and human mediated movement across hydrologic barriers. The USGS Nonindigenous Aquatic Species (NAS) Program is working with partners to define native ranges of inland fishes in the United States to help identify which species should be included in the NAS...
The Nonindigenous Aquatic Species Flood and Storm Tracker (FaST)
Storm-related flooding can lead to the potential spread of nonindigenous (or non-native) aquatic species into waterways they have not been seen in before. The USGS Nonindigenous Aquatic Species program has developed an innovative mapping tool to help natural resource managers with post-storm nonindigenous aquatic species detection and assessment efforts.
Knowledge Extraction Algorithms (KEA): Turning Literature Into Data
Identifying, extracting, and mobilizing information from current and historical literature is a time-consuming part of organizing and collating synthetic data productions. This project explored the use of algorithm-based methods to identify and extract occurrence information from the GeoDeepDive (GDD) literature database to support upkeep of the Nonindigenous Aquatic Species (NAS) data...
National Alert Risk Mapper for Nonindigenous Aquatic Species
The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and...
Great Lakes Aquatic Nuisance Species Information System
The Great Lakes Aquatic Nuisance Species Information System (GLANSIS) was developed by the NOAA Great Lakes Science Center to monitor nonindigenous aquatic species introductions into the Great Lakes region.
Nonindigenous aquatic species and potential spread after Hurricane Irma Nonindigenous aquatic species and potential spread after Hurricane Irma
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Irma. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Nonindigenous aquatic species and potential spread after Hurricane Nate Nonindigenous aquatic species and potential spread after Hurricane Nate
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Nate. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Nonindigenous aquatic species and potential spread after Hurricane Maria Nonindigenous aquatic species and potential spread after Hurricane Maria
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Maria. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Filter Total Items: 19
When are environmental DNA early detections of invasive species actionable? When are environmental DNA early detections of invasive species actionable?
Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of an eventual infestation. We used a structured decision making (SDM) framework to evaluate
Authors
Adam Sepulveda, Christine E. Dumoulin, Denise L. Blanchette, John Mcphedran, Colin Holme, Nathan Whalen, Margaret Hunter, Christopher M. Merkes, Catherine A. Richter, Matthew Neilson, Wesley M. Daniel, Devin Nicole Jones-Slobodian, David R. Smith
Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database
To advance national efforts for the detection and biosurveillance of aquatic invasive species (AIS), we employed a community consensus process to enable the incorporation of environmental DNA (eDNA) detection data into the U.S. Geological Survey’s (USGS) Nonindigenous Aquatic Species (NAS) database (https://nas.er.usgs.gov/eDNA/). Our goal was to identify minimum standards and best...
Authors
Jason Ferrante, Wesley M. Daniel, Jonathan Adam Freedman, Katy E. Klymus, Matthew Neilson, Yale Passamaneck, Christopher B. Rees, Adam J. Sepulveda, Margaret Hunter
Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida
We report on the discovery of a wild, reproducing population of Channa aurolineata (Pisces: Channidae) in west-central Florida (USA), and first documented occurrence of snakeheads in the Gulf Coast region. Channa aurolineata is a large, predatory fish of the bullseye snakehead “Marulius group” species complex from Asia. Adult and juvenile specimens were captured in June 2020 in a 1.8...
Authors
Leo Nico, Matthew Neilson, Robert H. Robins, John M. Pfeiffer, Matthew Kail, Zachary S. Randall, Eric A. Johnson
Using structured decision making to evaluate potential management responses to detection of dreissenid mussel (Dreissena spp.) environmental DNA Using structured decision making to evaluate potential management responses to detection of dreissenid mussel (Dreissena spp.) environmental DNA
Environmental (e)DNA tools are sensitive and cost-effective for early detection of invasive species. However, the uncertainty associated with the interpretation of positive eDNA detections makes it challenging to determine appropriate natural resource management responses. Multiple sources of error can give rise to positive detections of eDNA in a sample when individuals of that species...
Authors
Adam Sepulveda, David R. Smith, Katherine M. O'Donnell, Nathan Owens, Brittany White, Cathy A. Richter, Christopher M. Merkes, Skylar Wolf, Mike Rau, Matthew Neilson, Wesley M. Daniel, Christine E. Dumoulin, Margaret Hunter
A framework to integrate innovations in invasion science for proactive management A framework to integrate innovations in invasion science for proactive management
Invasive alien species (IAS) are a rising threat to biodiversity, national security, and regional economies, with impacts in the hundreds of billions of U.S. dollars annually. Proactive or predictive approaches guided by scientific knowledge are essential to keeping pace with growing impacts of invasions under climate change. Although the rapid development of diverse technologies and...
Authors
Charles B. van Rees, Brian K. Hand, Sean C. Carter, Charles Bargeron, Timothy Joseph Cline, Wesley M. Daniel, Jason A. Ferrante, Keith Gaddis, Margaret E. Hunter, Catherine S. Jarnevich, Melodie A. McGeoch, Jeffrey T. Morisette, Matthew E. Neilson, Helen E. Roy, Mary Ann Rozance, Adam Sepulveda, Rebekah D. Wallace, Diane Whited, Taylor Wilcox, John S. Kimball, Gordon Luikart
Community for data integration 2018 funded project report Community for data integration 2018 funded project report
The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 10 projects funded in fiscal year 2018, outlining their goals, activities, and accomplishments.
Authors
Leslie Hsu, Caitlin M. Andrews, John B. Bradford, Daniel D. Buscombe, Katherine J. Chase, Wesley M. Daniel, Jeanne M. Jones, Pam Fuller, Benjamin B. Mirus, Matthew E. Neilson, Hans W. Vraga, Jessica J. Walker, Dennis H. Walworth, Jonathan A. Warrick, Jake Weltzin, Daniel J. Wieferich, Nathan J. Wood
Non-USGS Publications**
Stepien, C.A., and M.E. Neilson. 2013. What’s in a name? Taxonomy and nomenclature of invasive gobies in the Great Lakes and beyond. Journal of Great Lakes Research 39: 555-559.
Neilson, M.E., and C.A. Stepien. 2011. Historic speciation and recent colonization of Eurasian monkey gobies (Neogobius fluviatilis and N. pallasi) revealed by DNA sequences, microsatellites, and morphology. Diversity and Distributions 17: 688-702.
Neilson, M.E., and C.A. Stepien. 2009. Escape from the Ponto-Caspian: evolution and biogeography of an endemic goby species flock (Benthophilinae: Gobiidae: Teleostei). Molecular Phylogenetics and Evolution54: 84-102.
Feldheim, K.A., P. Willink, J.E. Brown, D.J. Murphy, M.E. Neilson, and C.A. Stepien. 2009. Eight polymorphic microsatellite loci for the exotic round goby Neogobius melanostomus (Teleostei: Gobiidae) with cross-species amplification. Molecular Ecology Resources 9: 639-644.
Neilson, M.E., and C.A. Stepien. 2009. Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): evidence for new cryptic species. Biological Journal of the Linnean Society96: 664-684.
Stepien, C.A., J.E. Brown, M.E. Neilson, and M.A. Tumeo. 2005. Genetic diversity of invasive species in the Great Lakes versus their Eurasian source populations: insights for risk analysis. Risk Analysis 25: 1043-1060.
Neilson, M.E., and R.R. Wilson, Jr. 2005. mtDNA singletons as evidence of a post-invasion genetic bottleneck in yellowfin goby Acanthogobius flavimanus from San Francisco Bay, California. Marine Ecology Progress Series 296: 197-208.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Science and Products
Filter Total Items: 14
The Nonindigenous Aquatic Species Alert Risk Mapper (ARM)
The Nonindigenous Aquatic Species (NAS) program has developed a new tool, the NAS Alert Risk Mapper (ARM), to characterize waterbodies in the conterminous U.S. and Hawaii at potential risk of invasion from a new nonindigenous species sighting.
Defining Native Ranges of U.S. Inland Fishes
Understanding the native versus non-native range of a species can provide useful information about dispersal, population distribution patterns, and human mediated movement across hydrologic barriers. The USGS Nonindigenous Aquatic Species (NAS) Program is working with partners to define native ranges of inland fishes in the United States to help identify which species should be included in the NAS...
The Nonindigenous Aquatic Species Flood and Storm Tracker (FaST)
Storm-related flooding can lead to the potential spread of nonindigenous (or non-native) aquatic species into waterways they have not been seen in before. The USGS Nonindigenous Aquatic Species program has developed an innovative mapping tool to help natural resource managers with post-storm nonindigenous aquatic species detection and assessment efforts.
Knowledge Extraction Algorithms (KEA): Turning Literature Into Data
Identifying, extracting, and mobilizing information from current and historical literature is a time-consuming part of organizing and collating synthetic data productions. This project explored the use of algorithm-based methods to identify and extract occurrence information from the GeoDeepDive (GDD) literature database to support upkeep of the Nonindigenous Aquatic Species (NAS) data...
National Alert Risk Mapper for Nonindigenous Aquatic Species
The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and...
Great Lakes Aquatic Nuisance Species Information System
The Great Lakes Aquatic Nuisance Species Information System (GLANSIS) was developed by the NOAA Great Lakes Science Center to monitor nonindigenous aquatic species introductions into the Great Lakes region.
Nonindigenous aquatic species and potential spread after Hurricane Irma Nonindigenous aquatic species and potential spread after Hurricane Irma
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Irma. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Nonindigenous aquatic species and potential spread after Hurricane Nate Nonindigenous aquatic species and potential spread after Hurricane Nate
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Nate. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Nonindigenous aquatic species and potential spread after Hurricane Maria Nonindigenous aquatic species and potential spread after Hurricane Maria
This map was created to help assess impacts on nonindigenous aquatic species distributions due to flooding associated with Hurricane Maria. Storm surge and flood events can assist expansion and distribution of nonindigenous aquatic species through the connection of adjacent watersheds, backflow of water upstream of impoundments, increased downstream flow, and creation of freshwater...
Filter Total Items: 19
When are environmental DNA early detections of invasive species actionable? When are environmental DNA early detections of invasive species actionable?
Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of an eventual infestation. We used a structured decision making (SDM) framework to evaluate
Authors
Adam Sepulveda, Christine E. Dumoulin, Denise L. Blanchette, John Mcphedran, Colin Holme, Nathan Whalen, Margaret Hunter, Christopher M. Merkes, Catherine A. Richter, Matthew Neilson, Wesley M. Daniel, Devin Nicole Jones-Slobodian, David R. Smith
Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database
To advance national efforts for the detection and biosurveillance of aquatic invasive species (AIS), we employed a community consensus process to enable the incorporation of environmental DNA (eDNA) detection data into the U.S. Geological Survey’s (USGS) Nonindigenous Aquatic Species (NAS) database (https://nas.er.usgs.gov/eDNA/). Our goal was to identify minimum standards and best...
Authors
Jason Ferrante, Wesley M. Daniel, Jonathan Adam Freedman, Katy E. Klymus, Matthew Neilson, Yale Passamaneck, Christopher B. Rees, Adam J. Sepulveda, Margaret Hunter
Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida
We report on the discovery of a wild, reproducing population of Channa aurolineata (Pisces: Channidae) in west-central Florida (USA), and first documented occurrence of snakeheads in the Gulf Coast region. Channa aurolineata is a large, predatory fish of the bullseye snakehead “Marulius group” species complex from Asia. Adult and juvenile specimens were captured in June 2020 in a 1.8...
Authors
Leo Nico, Matthew Neilson, Robert H. Robins, John M. Pfeiffer, Matthew Kail, Zachary S. Randall, Eric A. Johnson
Using structured decision making to evaluate potential management responses to detection of dreissenid mussel (Dreissena spp.) environmental DNA Using structured decision making to evaluate potential management responses to detection of dreissenid mussel (Dreissena spp.) environmental DNA
Environmental (e)DNA tools are sensitive and cost-effective for early detection of invasive species. However, the uncertainty associated with the interpretation of positive eDNA detections makes it challenging to determine appropriate natural resource management responses. Multiple sources of error can give rise to positive detections of eDNA in a sample when individuals of that species...
Authors
Adam Sepulveda, David R. Smith, Katherine M. O'Donnell, Nathan Owens, Brittany White, Cathy A. Richter, Christopher M. Merkes, Skylar Wolf, Mike Rau, Matthew Neilson, Wesley M. Daniel, Christine E. Dumoulin, Margaret Hunter
A framework to integrate innovations in invasion science for proactive management A framework to integrate innovations in invasion science for proactive management
Invasive alien species (IAS) are a rising threat to biodiversity, national security, and regional economies, with impacts in the hundreds of billions of U.S. dollars annually. Proactive or predictive approaches guided by scientific knowledge are essential to keeping pace with growing impacts of invasions under climate change. Although the rapid development of diverse technologies and...
Authors
Charles B. van Rees, Brian K. Hand, Sean C. Carter, Charles Bargeron, Timothy Joseph Cline, Wesley M. Daniel, Jason A. Ferrante, Keith Gaddis, Margaret E. Hunter, Catherine S. Jarnevich, Melodie A. McGeoch, Jeffrey T. Morisette, Matthew E. Neilson, Helen E. Roy, Mary Ann Rozance, Adam Sepulveda, Rebekah D. Wallace, Diane Whited, Taylor Wilcox, John S. Kimball, Gordon Luikart
Community for data integration 2018 funded project report Community for data integration 2018 funded project report
The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 10 projects funded in fiscal year 2018, outlining their goals, activities, and accomplishments.
Authors
Leslie Hsu, Caitlin M. Andrews, John B. Bradford, Daniel D. Buscombe, Katherine J. Chase, Wesley M. Daniel, Jeanne M. Jones, Pam Fuller, Benjamin B. Mirus, Matthew E. Neilson, Hans W. Vraga, Jessica J. Walker, Dennis H. Walworth, Jonathan A. Warrick, Jake Weltzin, Daniel J. Wieferich, Nathan J. Wood
Non-USGS Publications**
Stepien, C.A., and M.E. Neilson. 2013. What’s in a name? Taxonomy and nomenclature of invasive gobies in the Great Lakes and beyond. Journal of Great Lakes Research 39: 555-559.
Neilson, M.E., and C.A. Stepien. 2011. Historic speciation and recent colonization of Eurasian monkey gobies (Neogobius fluviatilis and N. pallasi) revealed by DNA sequences, microsatellites, and morphology. Diversity and Distributions 17: 688-702.
Neilson, M.E., and C.A. Stepien. 2009. Escape from the Ponto-Caspian: evolution and biogeography of an endemic goby species flock (Benthophilinae: Gobiidae: Teleostei). Molecular Phylogenetics and Evolution54: 84-102.
Feldheim, K.A., P. Willink, J.E. Brown, D.J. Murphy, M.E. Neilson, and C.A. Stepien. 2009. Eight polymorphic microsatellite loci for the exotic round goby Neogobius melanostomus (Teleostei: Gobiidae) with cross-species amplification. Molecular Ecology Resources 9: 639-644.
Neilson, M.E., and C.A. Stepien. 2009. Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): evidence for new cryptic species. Biological Journal of the Linnean Society96: 664-684.
Stepien, C.A., J.E. Brown, M.E. Neilson, and M.A. Tumeo. 2005. Genetic diversity of invasive species in the Great Lakes versus their Eurasian source populations: insights for risk analysis. Risk Analysis 25: 1043-1060.
Neilson, M.E., and R.R. Wilson, Jr. 2005. mtDNA singletons as evidence of a post-invasion genetic bottleneck in yellowfin goby Acanthogobius flavimanus from San Francisco Bay, California. Marine Ecology Progress Series 296: 197-208.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.