Tara Schraga

Nutrient enrichment has degraded many of the world’s estuaries by amplifying algal production, leading to hypoxia/anoxia, loss of vascular plants and fish/shellfish habitat, and expansion of harmful blooms (HABs). Policies to protect coastal waters from the effects of nutrient enrichment require information to determine if a water body is impaired by nutrients and if regulatory actions are require

The U.S. Geological Survey (USGS) maintains a place-based research program in San Francisco Bay (USA) that began in 1969 and continues, providing one of the longest records of water-quality measurements in a North American estuary. Constituents include salinity, temperature, light extinction coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, nitrate,

The salinity gradient of estuaries plays a unique and fundamental role in structuring spatial patterns of physical properties, biota, and biogeochemical processes. We use variability along the salinity gradient of San Francisco Bay to illustrate some lessons about the diversity of spatial structures in estuaries and their variability over time. Spatial patterns of dissolved constituents (e.g., sil

Over 6,110 ha of the commercial production salt ponds surrounding South San Francisco Bay, CA, have been decommissioned and reconnected to the bay, most as part of the largest wetlands restoration program in the western United States. These open water ponds are critical habitat for millions of birds annually and restoration program managers must determine the appropriate balance between retention

A presumed value of shallow-habitat enhanced pelagic productivity derives from the principle that in nutrient-rich aquatic systems phytoplankton growth rate is controlled by light availability, which varies inversely with habitat depth. We measured a set of biological indicators across the gradient of habitat depth within the Sacramento–San Joaquin River Delta (California) to test the hypothesis t

Although surface water quality and its underlying processes vary over time scales ranging from seconds to decades, they have historically been studied at the lower (weekly to interannual) frequencies. The aim of this study was to investigate intradaily variability of three water quality parameters in a small freshwater tidal lagoon (Mildred Island, California). High frequency time series of specif

An exceptional red tide in San Francisco Bay was observed on 8 September 2004. The red tide had chlorophyll concentrations approaching 200 mg/m3 (Figure 1) in red/purple surface streaks containing high abundances of the dinoflagellate Akashiwo sanguinea. Red tides and harmful algal blooms (HABs) are common features of coastal ecosystems, and their growing frequency is a suspected outcome of coasta

We describe a large dinoflagellate bloom, unprecedented in nearly three decades of observation, that developed in San Francisco Bay (SFB) during September 2004. SFB is highly enriched in nutrients but has low summer‐autumn algal biomass because wind stress and tidally induced bottom stress produce a well mixed and light‐limited pelagic habitat. The bloom coincided with calm winds and record high a

Detritus from terrestrial ecosystems is the major source of organic matter in many streams, rivers, and estuaries, yet the role of detritus in supporting pelagic food webs is debated. We examined the importance of detritus to secondary productivity in the Sacramento and San Joaquin River Delta (California, United States), a large complex of tidal freshwater habitats. The Delta ecosystem has low pr

San Francisco Bay is the defining landscape feature of the place we call ‘The Bay Area,’ but most of us only experience the Bay as we view it from an airplane window or drive across one of its bridges. These views from afar suggest that the Bay is static and sterile, but this impression is deceptive. If you are one of the many thousands of students who have experienced the Bay through a school exc

Valuable water quality and biological datasets have been gathered in the Sacramento-San Joaquin Delta for decades, most notably by the Interagency Ecological Program’s Environmental Monitoring Program (EMP). These extensive data have provided a means of analyzing and detecting long-term trends in water quality and ecosystem function (Jassby and others 2002; Kimmerer and Orsi 1996; Orsi and Mecum 1