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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Foraging habitat for shorebirds in southeastern Missouri and its predicted future availability Foraging habitat for shorebirds in southeastern Missouri and its predicted future availability

Water management to protect agriculture in alluvial floodplains often conflicts with wildlife use of seasonal floodwater. Such is the case along the Mississippi River in southeastern Missouri where migrating shorebirds forage in shallow-flooded fields. I estimated the current availability of habitat for foraging shorebirds within the New Madrid and St. Johns Basins based on daily river...
Authors
Daniel J. Twedt

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

1. Ecologists often use nonlinear fitting techniques to estimate the parameters of complex ecological models, with attendant frustration. This paper compares three open-source model fitting tools and discusses general strategies for defining and fitting models. 2. R is convenient and (relatively) easy to learn, AD Model Builder is fast and robust but comes with a steep learning curve...
Authors
Benjamin M. Bolker, Beth Gardner, Mark Maunder, Casper W. Berg, Mollie Brooks, Liza Comita, Elizabeth Crone, Sarah Cubaynes, Trevor Davies, Perry de Valpine, Jessica Ford, Olivier Gimenez, Marc Kéry, Eun Jung Kim, Cleridy Lennert-Cody, Arni Magunsson, Steve Martell, John Nash, Anders Nielson, Jim Regentz, Hans Skaug, Elise Zipkin

Spatial education: improving conservation delivery through space-structured decision making Spatial education: improving conservation delivery through space-structured decision making

Adaptive management is a form of structured decision making designed to guide management of natural resource systems when their behaviors are uncertain. Where decision making can be replicated across units of a landscape, learning can be accelerated, and biological processes can be understood in a larger spatial context. Broad-based partnerships among land management agencies...
Authors
Clinton T. Moore, Terry L. Shaffer, Jill J. Gannon

Active adaptive management for reintroduction of an animal population Active adaptive management for reintroduction of an animal population

Captive animals are frequently reintroduced to the wild in the face of uncertainty, but that uncertainty can often be reduced over the course of the reintroduction effort, providing the opportunity for adaptive management. One common uncertainty in reintroductions is the short-term survival rate of released adults (a release cost), an important factor because it can affect whether...
Authors
Michael C. Runge

Training the next generation of river warriors Training the next generation of river warriors

Review of: Environmental Flows: Saving Rivers in the Third Millennium. Angela H. Arthington. University of California Press, 2012. 422 pp., illus. $75.00 (ISBN 9780520273696 cloth).
Authors
Mary Freeman

Environmental management of mosquito-borne viruses in Rhode Island Environmental management of mosquito-borne viruses in Rhode Island

West Nile Virus (WNV) and Eastern Equine Encephalitis Virus (EEEV) are both primarily bird viruses, which can be transmitted by several mosquito species. Differences in larval habitats, flight, and biting patterns of the primary vector species result in substantial differences in epidemiology, with WNV more common, primarily occurring in urban areas, and EEEV relatively rare, typically...
Authors
Howard S. Ginsberg, Alan Gettman, Elisabeth Becker, Ananda S. Bandyopadhyay, Roger A. LeBrun

Spatially explicit models for inference about density in unmarked or partially marked populations Spatially explicit models for inference about density in unmarked or partially marked populations

Recently developed spatial capture–recapture (SCR) models represent a major advance over traditional capture–recapture (CR) models because they yield explicit estimates of animal density instead of population size within an unknown area. Furthermore, unlike nonspatial CR methods, SCR models account for heterogeneity in capture probability arising from the juxtaposition of animal activity...
Authors
Richard B. Chandler, J. Andrew Royle

Integrating resource selection information with spatial capture--recapture Integrating resource selection information with spatial capture--recapture

1. Understanding space usage and resource selection is a primary focus of many studies of animal populations. Usually, such studies are based on location data obtained from telemetry, and resource selection functions (RSFs) are used for inference. Another important focus of wildlife research is estimation and modeling population size and density. Recently developed spatial capture...
Authors
J. Andrew Royle, Richard B. Chandler, Catherine C. Sun, Angela K. Fuller

Enhanced innate immune responses in a brood parasitic cowbird species: degranulation and oxidative burst Enhanced innate immune responses in a brood parasitic cowbird species: degranulation and oxidative burst

We examined the relative effectiveness of two innate immune responses in two species of New World blackbirds (Passeriformes, Icteridae) that differ in resistance to West Nile virus (WNV). We measured degranulation and oxidative burst, two fundamental components of phagocytosis, and we predicted that the functional effectiveness of these innate immune responses would correspond to the...
Authors
D. Caldwell Hahn, Scott G. Summers, Kenneth J. Genovese, Haiqi He, Michael H. Kogut

Toxic exposure of songbirds to lead in the Southeast Missouri Lead Mining District Toxic exposure of songbirds to lead in the Southeast Missouri Lead Mining District

Mining and smelting in the Southeast Missouri Lead Mining District has caused widespread contamination of soils with lead (Pb) and other metals. Soils from three study sites sampled in the district contained from approximately 1,000–3,200 mg Pb/kg. Analyses of earthworms [33–4,600 mg Pb/kg dry weight (dw)] collected in the district showed likely high Pb exposure of songbirds preying on...
Authors
W. Nelson Beyer, J. Christian Franson, John B. French, Thomas May, Barnett A. Rattner, Valerie I. Shearn-Bochsler, Sarah E. Warner, John Weber, David Mosby

Phytotoxicity of zinc and manganese to seedlings grown in soil contaminated by zinc smelting Phytotoxicity of zinc and manganese to seedlings grown in soil contaminated by zinc smelting

Historic emissions from two zinc smelters have injured the forest on Blue Mountain near Palmerton, Pennsylvania, USA. Seedlings of soybeans and five tree species were grown in a greenhouse in a series of mixtures of smelter-contaminated and reference soils and then phytotoxic thresholds were calculated. As little as 10% Palmerton soil mixed with reference soil killed or greatly stunted...
Authors
W. N. Beyer, C.E. Green, M. Beyer, R. L. Chaney

Conservation of avian diversity in the Sierra Nevada: moving beyond a single-species management focus Conservation of avian diversity in the Sierra Nevada: moving beyond a single-species management focus

Background: As a result of past practices, many of the dry coniferous forests of the western United States contain dense, even-aged stands with uncharacteristically high levels of litter and downed woody debris. These changes to the forest have received considerable attention as they elevate concerns regarding the outcome of wildland fire. However, attempts to reduce biomass through fuel
Authors
Angela M. White, Elise F. Zipkin, Patricia N. Manley, Matthew D. Schlesinger
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