Decision Support Tools and Modeling
Decision Support Tools and Modeling
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R package creation supports cutting edge science
R is a free software that is used to run statistical analyses and models as well as create figures such as graphs and maps that can be used to display the data collected. While using this software researchers can also use downloadable packages that increase the number of analyses and models they can perform. Statisticians and researchers collaborate to create new packages that can be used by other...
occStan: Occupancy models with RStan
Occupancy models are used by researchers to estimate the true occupancy of a species and accounts for imperfect detection of organisms in a study. Researchers will visit sampling sites to collect species detection data (e.g., species count). Occupancy models can predict the detection probability (probability of finding a species at a specific time and site) and occupancy (probability a species...
Multiscale occupancy modeling of environmental DNA using the R package EDNAOCCUPANCY
Presence-absence surveys are commonly used to estimate the spatial distribution of a species. However, during a field survey some organisms, especially rare or elusive species, can be missed; increasing the chance of error in the data collected. To combat the potential error, researchers will regularly visit sites and collect more data that will later be analyzed using occupancy models. Occupancy...
Climate matching with the climatchR R package
Climate matching is a method for understanding species distributions and ranges and may be used as part of horizon scanning. Horizon scanning is the process of examining potential risk of invasion of new invasive species. Preventing new invasive species invasion requires less time and resources than attempting to control and remove established invasive species. Horizon scanning allows resource...
Modeling to inform bighead and silver carp management
Bighead carp ( Hypophthalmichthys nobilis ) and silver carp ( Hypophthalmichthys molitrix ) are invasive carp species within the Mississippi River basin. In the early-1970s these species escaped from ponds where people introduced them to control algae (ICRCC). Invasive carp cause ecological and economic damage by outcompeting native species and disrupting native food webs. Stopping the spread of...
Modeling Overview at UMESC
Models seek to describe the natural world around us and how we interact with the world. For example, physical models might help Upper Midwest Environmental Sciences Center (UMESC) visitors understand landscapes, such as the Mississippi River or topology and water flow.
TrendPowerTool: A web lookup tool for estimating the statistical power of a monitoring program to detect population trends
A simulation-based power analysis can be used to estimate the sample sizes needed for a successful monitoring program, but requires technical expertise and sometimes extensive computing resources. We developed a web-based lookup app, called TrendPowerTool, to provide guidance for ecological monitoring programs when resources are not available for a simulation-based power analysis (Fig. 1)...
Database and web application for invasive carp catch data (Illinois River Catch Database)
Four types of invasive carp are currently found in the United States: black, grass, silver, and bighead carps. These species are fast growing, prolific feeders that out-compete native fish species and drastically alter the natural ecosystems they invade. To prevent the spread of invasive carp into the Great Lakes, the multi-agency Asian Carp Regional Coordinating Committee (ACRCC) implements...
Database and web application for invasive carp telemetry data (FishTracks)
Four types of invasive carp fish species, are currently found in the United States: black, grass, silver, and bighead carps. These species are fast growing, prolific feeders that out-compete native fish species and drastically alter the natural ecosystems they invade. To prevent the spread of invasive carp into the Great Lakes, the multi-agency Asian Carp Regional Coordinating Committee (ACRCC)...
Upper Mississippi River System Weighted Wind Fetch Analysis (1989, 2000, 2010/2011)
Wind fetch is defined as the unobstructed distance that wind can travel over water in a constant direction. Fetch is an important characteristic of open water because longer fetch can result in larger wind-generated waves. The larger waves, in turn, can increase shoreline erosion and sediment re-suspension.
Decision-support tool for managing endangered species in the face of uncertainty
Along the Santa Clara River in California, populations of the federally and state-listed Least Bell's Vireo ( Vireo bellii pusillus ) are recovering from near extirpation. Habitat protection and restoration, as well as reducing brood parasitism by Brown-headed Cowbirds ( Molothrus ater ), are thought to be the primary drivers of this recovery. The challenge going forward is to find the right...
Monarch Conservation Planning Tools
Monarch Conservation Planning Tools