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Explore WARC's science publications.

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Plant migration due to winter climate change: Range expansion of tropical invasive plants in response to warming winters Plant migration due to winter climate change: Range expansion of tropical invasive plants in response to warming winters

Warming winters due to climate change can facilitate the range expansion of invasive non-native species. In the southeastern United States, the frequency and intensity of extreme winter temperatures determines the northern range limits of many tropical organisms including many species of invasive non-native plants. However, the effects of winter climate change on invasive species’ range...
Authors
Michael Osland, Bogdan Chivoiu, Laura Feher, Leah Dale, Deah Lieurance, Wesley Daniel, Jessica E. Spencer

Reduction of paraoxonase expression followed by inactivation across independent semiaquatic mammals suggests stepwise path to pseudogenization Reduction of paraoxonase expression followed by inactivation across independent semiaquatic mammals suggests stepwise path to pseudogenization

Convergent adaptation to the same environment by multiple lineages frequently involves rapid evolutionary change at the same genes, implicating these genes as important for environmental adaptation. Such adaptive molecular changes may yield either change or loss of protein function; loss of function can eliminate newly deleterious proteins or reduce energy necessary for protein...
Authors
Allie M. Graham, Jerrica M. Jamison, Marisol Bustos, Charlotte Cournoyer, Alexa Michaels, Jason S. Presnell, Rebecca Richter, Daniel E. Crocker, Ari Fustukjian, Margaret Hunter, Lorrie D. Rea, Judit Marsillach, Clement E. Furlong, Wynn K. Meyer, Nathan L. Clark

Isotopic niche of New Jersey terrapins suggests intraspecific resource partitioning, and little variability following a major hurricane Isotopic niche of New Jersey terrapins suggests intraspecific resource partitioning, and little variability following a major hurricane

Diamondback terrapins (Malaclemys terrapin) are sexually dimorphic generalist turtles that inhabit salt marshes and estuaries along the Atlantic and Gulf coasts of the United States. On October 29th, 2012, Hurricane Sandy made landfall in New Jersey, USA, directly impacting terrapin populations inhabiting central and southern Barnegat Bay. To examine potential food web mediated impacts...
Authors
Mathew Denton, Kristen Hart, John Wnek, Sarah A. Moss, Harold W. Avery

The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration

Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal...
Authors
John W. Day, Robert R. Twilley, Angelina Freeman, Brady Couvillion, Tracy Quirk, Navid H. Jafari, Giulio Mariotti, Rachael Hunter, Charles Norman, G. Paul Kemp, John R. White, Ehab Meselhe

A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida) A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)

The proliferation of genomic sequencing approaches has significantly impacted the field of phylogenetics. Target capture approaches provide a cost-effective, fast and easily applied strategy for phylogenetic inference of non-model organisms. However, several existing target capture processing pipelines are incapable of incorporating whole genome sequencing (WGS). Here, we develop a new...
Authors
André Gomes-dos-Santos, Elsa Froufe, John M. Pfeiffer, Nathan Johnson, Chase H. Smith, Andre M. Machado, L. Filipe C. Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V. Whelan, Ivan N. Bolotov, Ilya V. Vikhrev, Alexander V. Kondakov, Mohamed Ghamizi, Vincent Prie, Arthur E. Bogan, Manuel Lopes Lima

Quantifying uncertainty in coastal salinity regime for biological application using quantile regression Quantifying uncertainty in coastal salinity regime for biological application using quantile regression

Salinity regimes in coastal ecosystems are highly dynamic and driven by complex geomorphic and hydrological processes. Estuarine biota are generally adapted to salinity fluctuation, but are vulnerable to salinity extremes. Characterizing coastal salinity regime for ecological studies therefore requires representing extremes of salinity ranges at time scales relevant to ecology (e.g...
Authors
Simeon Yurek, Micheal S Allen, Mitchell J. Eaton, David Chagaris, Nathan Reaver, Julien Martin, Peter C Frederick, Mark Dehaven

Modeling impacts of saltwater intrusion on methane and nitrous oxide emissions in tidal forested wetlands Modeling impacts of saltwater intrusion on methane and nitrous oxide emissions in tidal forested wetlands

Emissions of methane (CH4) and nitrous oxide (N2O) from soils to the atmosphere can offset the benefits of carbon sequestration for climate change mitigation. While past study has suggested that both CH4 and N2O emissions from tidal freshwater forested wetlands (TFFW) are generally low, the impacts of coastal droughts and drought-induced saltwater intrusion on CH4 and N2O emissions...
Authors
Hongqing Wang, Zhaohua Dai, Ken Krauss, Carl C. Trettin, Gregory E. Noe, Andrew J. Burton, Eric Ward

Community for data integration 2019 project report Community for data integration 2019 project report

The U.S. Geological Survey Community for Data Integration annually supports small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 14 projects supported in fiscal year 2019 and outlines their goals, activities, and accomplishments. Proposals in 2019 were...
Authors
Amanda N. Liford, Caitlin M. Andrews, Aparna Bamzai-Dodson, Joseph A. Bard, David S. Blehert, John B. Bradford, Wesley M. Daniel, Sara L. Caldwell Eldridge, Frank L. Engel, Jason A. Ferrante, Amy K. Gilmer, Margaret E. Hunter, Jeanne M. Jones, Benjamin Letcher, Frances L. Lightsom, Richard R. McDonald, Leah E. Morgan, Sasha C. Reed, Leslie Hsu

Monitoring of wave, current, and sediment dynamics along the Chincoteague living shoreline, Virginia Monitoring of wave, current, and sediment dynamics along the Chincoteague living shoreline, Virginia

Nature-based features, also called living shorelines, are increasingly applied in coastal protection and restoration. However, the processes and mechanisms (feedbacks and interactions) of wave attenuation, current velocity change, and sediment deposition and erosion along the living shoreline remain unclear, thus limiting the adaptive management of living shoreline restoration projects...
Authors
Hongqing Wang, Q. Chen, Nan Wang, William D. Capurso, L.M. Niemoczynski, Ling Zhu, G.A. Snedden, Kevin S. Holcomb, Bowdoin W. Lusk, Carol W. Wilson, Sean R. Cornell

Assessing risk communication in the pet and aquarium trade: An analysis of outreach and engagement efforts Assessing risk communication in the pet and aquarium trade: An analysis of outreach and engagement efforts

The international pet and aquarium trade, and intentional or unintentional release of those pets by individuals, has contributed to the establishment of many species to areas where they are not native, resulting in detrimental consequences to local ecosystems, economies, and livelihoods. A number of outreach campaigns across the United States aim to communicate the risk of non-native pet...
Authors
Kelly G. Guilbeau, Kristen Reaver, Blake Blaskowski, Emily Marie Dean, Wesley Daniel

Shorebird monitoring using spatially explicit occupancy and abundance Shorebird monitoring using spatially explicit occupancy and abundance

Loss of habitat and human disturbance are major factors in the worldwide decline of shorebird populations, including that of the threatened migratory piping plover (Charadrius melodus). From 2013 to 2018, we conducted land-based surveys of the shorebird community every other week during the peak piping plover season (September to March). We assessed the ability of a thin plate spline...
Authors
Eve Bohnett, Jessica Schulz, Robert C. Dobbs, Thomas Hoctor, Dave Hulse, Bilal Ahmad, Wajid Rashid, Hardin Waddle

How do ambient conditions and management actions affect manatee movements and habitat use? How do ambient conditions and management actions affect manatee movements and habitat use?

Kings Bay in northwest Florida, USA, is an important winter home of the largest aggregation of Florida manatee (Trichechus manatus latirostris), and the only location in the United States where visitors legally swim and interact with manatees. In addition to ambient conditions, visitors to the area and management actions have the potential to influence manatee behaviors. We tracked 32...
Authors
Daniel Slone, Susan M. Butler, James P. Reid, Joyce Kleen, Joyce Palmer
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