Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”
February 28, 2023
Raw sequencing data as generated by the five different methods used are provided for each of the three samples used in the comparison. The files are in FASTQ format as exported from the Oxford Nanopore’s MK1C using MinION flowcells. Files are labeled according to the method (as described in the paper) and the Sample ID). The MK1C exports data in blocks of 6000 reads per FASTQ file and all the FASTQ files from each method and sample are grouped in a common folder.
Citation Information
Publication Year | 2023 |
---|---|
Title | Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology” |
DOI | 10.5066/P93VXVGO |
Authors | Hon S Ip, Sarah A Uhm, Mary Lea Killian, Mia Torchetti |
Product Type | Data Release |
Record Source | USGS Asset Identifier Service (AIS) |
USGS Organization | National Wildlife Health Center |
Rights | This work is marked with CC0 1.0 Universal |
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An evaluation of avian influenza virus whole-genome sequencing approaches using nanopore technology
As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid se
Authors
Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti
Related
An evaluation of avian influenza virus whole-genome sequencing approaches using nanopore technology
As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid se
Authors
Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti