Software
An official USGS software project is code reviewed and approved at the bureau-level for distribution.
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Vignette Bayesian Site Occupancy Model Bat Acoustic Data Vignette Bayesian Site Occupancy Model Bat Acoustic Data
The purpose of this document is to demonstrate how data collected by the Pacific Northwest Bat Hub, a member of the North American Bat Monitoring Program (NABat), may be used to make inferences about species occurrence. As motivation, we consider occurrence data collected on Silver-haired bats (Lasionycteris noctivagans, LANO) in Oregon and Washington in 2019. In particular, we are...
Conservation Efforts Database Batch Upload Template and User Manual (Cutthroat Trout Recovery Module) Conservation Efforts Database Batch Upload Template and User Manual (Cutthroat Trout Recovery Module)
This ArcGIS Pro project template is being provided to the public in support of scientists who wish to upload data to the Conservation Efforts Database (CED).
Python-based Subaerial Barrier Sediment Partitioning (pySBSP) model (ver. 1.0, February 2024) Python-based Subaerial Barrier Sediment Partitioning (pySBSP) model (ver. 1.0, February 2024)
The Python-based Subaerial Barrier Sediment Partitioning (pySBSP) model is a framework to simulate the morphological development of an idealized barrier coast in the cross-shore domain. It is based off the original framework of the same name, which is coded in in MATLAB. pySBSP consists of two scripts; one includes a basic graphical user interface (GUI) to simplify parameter input, while...
ever4cast ever4cast
The Everglades Forecasting application (EverForecast) is a hydrologic and multi-species management tool. Designed to support natural resource managers, the tool simulates near future water levels across the Florida Everglades and models the likely impacts on the habitats and populations of numerous species. EverForecast is part of the Joint Ecosystem Modeling (JEM) suite of tools. The...
North American Bat Monitoring Program: NABat Acoustic ML (version 2.0.0) North American Bat Monitoring Program: NABat Acoustic ML (version 2.0.0)
Bats play crucial ecological roles, and provide valuable ecosystem services, yet many populations face serious threats from various ecological disturbances. The North American Bat Monitoring Program (NABat) aims to assess status and trends of bat populations, while developing innovative and community-driven conservation solutions using its unique data and technology infrastructure. To...
Code to fit spatially explicit capture-recapture models to trapping data for western deer mice (Peromyscus sonoriensis) at Point Reyes National Seashore Code to fit spatially explicit capture-recapture models to trapping data for western deer mice (Peromyscus sonoriensis) at Point Reyes National Seashore
This repository contains code to fit Spatially-Explicit Capture Recapture (SECR) Models to trapping data for Peromyscus sonoriensis (deer mice) at Point Reyes National Seashore and reproduce analyses in the following manuscript: Rose, J.P., Parsons, L.S., Kleeman, P.M., and Halstead, B.J. 2024. Effect of invasive plant removal on the density of Peromyscus sonoriensis (western deer mice)...