U.S. Geological Survey (USGS) scientists have developed a model that demonstrates how migratory wild birds in urban areas can acquire bacteria that are resistant to antibiotics, including those used in clinics, and potentially disperse these bacteria between continents via migration.
Antimicrobial resistant (AMR) bacteria have been a concern for human and animal health, with an increasing number of clinical infections no longer responding to once-standard treatments. In addition, the use of antibiotics as growth promoters in livestock has been associated with increased antibiotic resistance in poultry, swine, and cattle. The environmental pathways of AMR bacteria are not well understood in part owing to the complexities of AMR spread and low levels of environmental surveillance. Previous research determined that gulls, especially those inhabiting landfills, sometimes acquire AMR bacteria; however, unanswered questions remain about AMR bacteria dispersal in different environments and its relevance, if any, to human health.
Researchers are beginning to address these questions through a series of coordinated studies. Researchers chose to begin by studying migratory gull populations in Alaska, an area with discrete populated areas and little livestock, thus providing somewhat well-defined human inputs. Researchers focused on identifying individual Escherichia coli (E. coli) from the gull feces, and then determined if the E. coli contained antimicrobial resistant genes by testing for resistance to 18 antibiotics and analyzing the bacterial deoxyribonucleic acid (DNA). A model was then developed using information on AMR bacteria and animal tracking to understand the potential for dispersal through migratory movements.
Results indicate that gulls acquire AMR bacteria at urban areas with human inputs (such as landfills) and that birds potentially disperse these bacteria across and between continents along their migratory pathways. Screening of E. coli found within the fecal samples indicated resistance to a wide variety of antibiotics including colistin and carbapenems, which are important antibiotics used for treating multidrug-resistant infections in humans.
Interspecies transmission of clinically important AMR bacteria has been demonstrated among humans, domestic animals, and wildlife in other situations such as backyard production of agricultural animals. In this series of studies, the results indicated migratory birds can acquire and disperse AMR bacteria—some of which are clinically relevant—along their migratory pathways; however, the occurrence and frequency of transmission between wildlife and humans are still unknown.
Findings from these studies help to refine our understanding of the environmental pathways through which AMR bacteria are spread, as well as the potential for wildlife to serve as sentinels for understanding the burden of AMR bacteria in human populations. Logical next steps may include comparison of AMR bacteria among geographic locations throughout migratory pathways, instituting systematic data collection to allow for comparisons among sites, genomic comparisons of AMR bacteria derived from human clinical cases and wild birds from the same geographic region and time period, and assessing the effect of different waste management practices on the availability of AMR bacteria to wild birds.
These studies were supported by the USGS Ecosystems Mission Area's Environmental Health Program (Contaminant Biology and Toxic Substances Hydrology), and Species Management Program; The U.S. Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services; Region Kalmar County, Sweden and Linköping University; the Swedish Research Council (grant number 2018-03841); and European Union’s Horizon 2020 – Research and Innovation Framework Programme (grant number 727922, Delta-Flu).
Data release related to science feature.
Data for Continental-Scale Dispersal of Antimicrobial Resistant Bacteria by Alaska Landfill-Foraging Gulls
Sampling and Resistance and Genomic Typing of Cephalosporin-resistant E. coli in Gulls (Larus spp.) and Bald Eagles (Haliaeetus leucocephalus) in Southcentral Alaska, 2016
Antibiotic-Resistant Escherichia coli in Migratory Birds Inhabiting Remote Alaska, 2015
Publications related to this research
Genomically diverse carbapenem resistant Enterobacteriaceae from wild birds provide insight into global patterns of spatiotemporal dissemination
Evidence for continental-scale dispersal of antimicrobial resistant bacteria by landfill-foraging gulls
Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis
Antibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska
- Overview
U.S. Geological Survey (USGS) scientists have developed a model that demonstrates how migratory wild birds in urban areas can acquire bacteria that are resistant to antibiotics, including those used in clinics, and potentially disperse these bacteria between continents via migration.
Antimicrobial resistant (AMR) bacteria have been a concern for human and animal health, with an increasing number of clinical infections no longer responding to once-standard treatments. In addition, the use of antibiotics as growth promoters in livestock has been associated with increased antibiotic resistance in poultry, swine, and cattle. The environmental pathways of AMR bacteria are not well understood in part owing to the complexities of AMR spread and low levels of environmental surveillance. Previous research determined that gulls, especially those inhabiting landfills, sometimes acquire AMR bacteria; however, unanswered questions remain about AMR bacteria dispersal in different environments and its relevance, if any, to human health.
Map of the migratory pathway of glaucous gulls from Alaska to Russia and down Pacific US coastline Researchers are beginning to address these questions through a series of coordinated studies. Researchers chose to begin by studying migratory gull populations in Alaska, an area with discrete populated areas and little livestock, thus providing somewhat well-defined human inputs. Researchers focused on identifying individual Escherichia coli (E. coli) from the gull feces, and then determined if the E. coli contained antimicrobial resistant genes by testing for resistance to 18 antibiotics and analyzing the bacterial deoxyribonucleic acid (DNA). A model was then developed using information on AMR bacteria and animal tracking to understand the potential for dispersal through migratory movements.
Results indicate that gulls acquire AMR bacteria at urban areas with human inputs (such as landfills) and that birds potentially disperse these bacteria across and between continents along their migratory pathways. Screening of E. coli found within the fecal samples indicated resistance to a wide variety of antibiotics including colistin and carbapenems, which are important antibiotics used for treating multidrug-resistant infections in humans.
Scientists Andrew Ramey, Bjorn Olsen, and Jonas Bonnedahl (L to R) setting a trap for gulls at the Soldotna landfill in June 2016. Interspecies transmission of clinically important AMR bacteria has been demonstrated among humans, domestic animals, and wildlife in other situations such as backyard production of agricultural animals. In this series of studies, the results indicated migratory birds can acquire and disperse AMR bacteria—some of which are clinically relevant—along their migratory pathways; however, the occurrence and frequency of transmission between wildlife and humans are still unknown.
Findings from these studies help to refine our understanding of the environmental pathways through which AMR bacteria are spread, as well as the potential for wildlife to serve as sentinels for understanding the burden of AMR bacteria in human populations. Logical next steps may include comparison of AMR bacteria among geographic locations throughout migratory pathways, instituting systematic data collection to allow for comparisons among sites, genomic comparisons of AMR bacteria derived from human clinical cases and wild birds from the same geographic region and time period, and assessing the effect of different waste management practices on the availability of AMR bacteria to wild birds.
These studies were supported by the USGS Ecosystems Mission Area's Environmental Health Program (Contaminant Biology and Toxic Substances Hydrology), and Species Management Program; The U.S. Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services; Region Kalmar County, Sweden and Linköping University; the Swedish Research Council (grant number 2018-03841); and European Union’s Horizon 2020 – Research and Innovation Framework Programme (grant number 727922, Delta-Flu).
- Data
Data release related to science feature.
Data for Continental-Scale Dispersal of Antimicrobial Resistant Bacteria by Alaska Landfill-Foraging Gulls
This data set includes information on collections of fecal samples from wild gulls (Larus spp.) at seven locations in Alaska, USA. Samples were screened for Escherichia coli (E. coli) and tested for resistance to multiple antibiotics.Sampling and Resistance and Genomic Typing of Cephalosporin-resistant E. coli in Gulls (Larus spp.) and Bald Eagles (Haliaeetus leucocephalus) in Southcentral Alaska, 2016
This data set includes information on collections of fecal or cloacal samples from wild birds at a location in Alaska, USA. Samples were screened for Escherichia coli (E. coli) and tested for resistance to multiple antibiotics.Antibiotic-Resistant Escherichia coli in Migratory Birds Inhabiting Remote Alaska, 2015
This data set includes information on collections of fecal or cloacal samples from wild birds at two locations in Alaska, USA. Samples were screened or Escherichia coli (E. coli) and tested for resistance to multiple antibiotics using a variety of methods. - Publications
Publications related to this research
Genomically diverse carbapenem resistant Enterobacteriaceae from wild birds provide insight into global patterns of spatiotemporal dissemination
Carbapenem resistant Enterobacteriaceae (CRE) are a threat to public health globally, yet the role of the environment in the epidemiology of CRE remains elusive. Given that wild birds can acquire CRE, likely from foraging in anthropogenically impacted areas, and may aid in the maintenance and dissemination of CRE in the environment, a spatiotemporal comparison of isolates from different regions anEvidence for continental-scale dispersal of antimicrobial resistant bacteria by landfill-foraging gulls
Anthropogenic inputs into the environment may serve as sources of antimicrobial resistant bacteria and alter the ecology and population dynamics of synanthropic wild animals by providing supplemental forage. In this study, we used a combination of phenotypic and genomic approaches to characterize antimicrobial resistant indicator bacteria, animal telemetry to describe host movement patterns, and aAcquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis
Antimicrobial resistance (AMR) in bacterial pathogens threatens global health, though the spread of AMR bacteria and AMR genes between humans, animals, and the environment is still largely unknown. Here, we investigated the role of wild birds in the epidemiology of AMR Escherichia coli. Using next-generation sequencing, we characterized cephalosporin-resistant E. coli cultured from sympatric gullsAntibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska
We explored the abundance of antibiotic-resistant Escherichia coli among migratory birds at remote sites in Alaska and used a comparative approach to speculate on plausible explanations for differences in detection among species. At a remote island site, we detected antibiotic-resistant E. coli phenotypes in samples collected from glaucous-winged gulls (Larus glaucescens), a species often associat