Through my service at the USGS Alaska Science Center, I support the development and application of genetic and genomic tools to advance molecular ecology research pertaining to wildlife health and disease, population genetics, and environmental DNA. Research in the Molecular Ecology Lab promotes informed decisions regarding the conservation of fish and wildlife resources.
I currently serve as the Director of the Molecular Ecology Lab at the USGS Alaska Science Center. The team of scientists working in the Molecular Ecology Lab develops and applies tools to obtain information on the health, distribution, and genomic characteristics of biological natural resources. This includes collecting and interpreting data on the health and disease status of fish and wildlife, the genetics of animal and plant populations, and the distribution of animals and pathogens using environmental DNA. We use this information to help partners and the public to make informed decisions regarding the conservation of fish and wildlife resources.
Professional Experience
2012 - Present Research Wildlife Geneticist, USGS Alaska Science Center, Alaska
2006 - 2012 Geneticist, USGS Alaska Science Center, Alaska
2003 - 2006 Wildlife Biologist, USGS Alaska Science Center, Alaska
2001 - 2002 Biological Science Technician, Togiak National Wildlife Refuge, Alaska
Education and Certifications
Ph.D. 2015 University of Georgia, Athens, GA Veterinary and Biomedical Sciences
B.S. 2001 Colorado State University, Fort Collins, CO Fishery Biology and Wildlife Biology
Affiliations and Memberships*
Associate Editor: Journal of Wildlife Diseases (2016 - present)
Associate Editor: Ornithology (2020 – present)
Member: American Association for the Advancement of Science, American Ornithological Society (elected), Wildlife Disease Association
Reviewer: more than 35 journal outlets
Honors and Awards
U.S. Fish & Wildlife Service Star Award: 2002
U.S. Geological Survey Star Award: 2003, 2007 - 2009
U.S. Geological Survey performance awards: 2010 - 2022
Science and Products
Wildlife Disease and Environmental Health in Alaska
Avian Influenza Research
Q&A: The Molecular Ecology Lab at the USGS Alaska Science Center
Q&A: Bird Flu - Ongoing Threat of Highly Pathogenic Avian Influenza (HPAI) in Alaska and North America
Antibiotic Resistant Bacteria Acquired by Wild Birds in Urban Settings and Dispersed via Migration
Molecular Ecology Laboratory
Tracking Data for Three Large-bodied Gull Species and Hybrids (Larus spp.)
Blue-winged Teal and Cross Continental Avian Influenza Transmission
Swan Research
Tracking Data for Blue-winged Teal (Anas discors)
Antibiotic Resistant Bacteria in Migratory Birds
High Priority Species for Avian Influenza in Alaska
Antimicrobial Resistance Testing and qPCR Detection of Antimicrobial Resistance Genes in Surface Water and Gull (Larus spp.) Feces on the Kenai Peninsula, Alaska, 2021
Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl
Temporal Viral Viability Data from Avian Influenza A Viruses Maintained in Alaska Wetlands Under Experimental and Environmental Conditions
Blood Parasite Infection, Body Mass, and Survival Data from Emperor Geese (Anser canagicus), Yukon-Kuskokwim Delta, Alaska, 2006-2016
Blood Parasite Infection Data from Emperor Geese (Anser canagicus) and Cackling Geese (Branta hutchinsii minima), Yukon-Kuskokwim Delta, Alaska, 1998-2014
Tracking Data for Three Large-bodied Gull Species and Hybrids (Larus spp.)
Data for Continental-Scale Dispersal of Antimicrobial Resistant Bacteria by Alaska Landfill-Foraging Gulls
Temporal Viral Viability Data from Avian Influenza A Viruses Maintained in North American Wetlands Under Experimental and Environmental Conditions
Waterfowl occurrence and residence time as indicators of H5 and H7 avian in?uenza in North American Poultry
Influenza A Virus Persistence Data from an Urban Wetland in Anchorage, Alaska, 2018-2019
DNA Microsatellite Markers for Northern Fulmar (Fulmaris glacialis) and Cross-species Amplification in Select Seabird Species
Tracking Data for Blue-winged Teal (Anas discors)
Avian influenza in wild birds
Baiting and banding: Expert opinion on how bait trapping may influence the occurrence of highly pathogenic avian influenza (HPAI) among dabbling ducks
Environmental antimicrobial resistance gene detection from wild bird habitats using two methods: A commercially available culture-independent qPCR assay and culture of indicator bacteria followed by whole-genome sequencing
Exchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches
Waterfowl recently infected with low pathogenic avian influenza exhibit reduced local movement and delayed migration
Survey for selected parasites in Alaska brown bears (Ursus arctos)
A serological survey of Francisella tularensis exposure in wildlife on the Arctic Coastal Plain of Alaska
Avian influenza antibody prevalence increases with mercury contamination in wild waterfowl
Spatiotemporal changes in influenza A virus prevalence among wild waterfowl inhabiting the continental United States throughout the annual cycle
Proceedings of the Highly Pathogenic Avian Influenza and Wild Birds Webinar Series, August 2–5, 2021
Antibiotic resistance in free-ranging wildlife
Highly pathogenic avian influenza (HPAI): An emerging disease threat in North America
Science and Products
- Science
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Wildlife Disease and Environmental Health in Alaska
Environmental health is defined by connections between the physical environment, ecological health, and human health. Current research within the U.S. Geological Survey (USGS) recognizes the importance of this integrated research philosophy, which includes study of disease and pollutants as they pertain to both wildlife and humans. Due to its key geographic location and significant wildlife...Avian Influenza Research
Since 2006, the USGS Alaska Science Center has been part of the State and Federal interagency team for the detection and response to highly pathogenic (HPAI) viruses in North America. Avian influenza or "bird flu" is a viral disease that primarily infects domestic poultry and wild birds. Avian influenza viruses are naturally occurring in wild birds such as ducks, geese, swans, and gulls. These...Q&A: The Molecular Ecology Lab at the USGS Alaska Science Center
The Molecular Ecology Lab at the USGS Alaska Science Center provides genetic information on the health and status of biological resources for diverse local, state, and federal partners. Hypothesis-driven research projects are designed to fill data gaps and inform decisions for Department of Interior and other management agencies. The Molecular Ecology Lab research portfolio currently includes...Q&A: Bird Flu - Ongoing Threat of Highly Pathogenic Avian Influenza (HPAI) in Alaska and North America
Since 2006, the USGS has cooperated with many federal, state, and tribal agency partners in the detection of and response to Avian Influenza (AI) viruses including highly pathogenic AI (or HPAI) viruses in wild birds in North America. Avian influenza, also known as "bird flu", is a viral disease that infects domestic poultry and wild birds. HPAI is an ecologically and economically significant...Antibiotic Resistant Bacteria Acquired by Wild Birds in Urban Settings and Dispersed via Migration
U.S. Geological Survey (USGS) scientists have developed a model that demonstrates how migratory wild birds in urban areas can acquire bacteria that are resistant to antibiotics, including those used in clinics, and potentially disperse these bacteria between continents via migration.Molecular Ecology Laboratory
The main objectives of the USGS ASC molecular ecology research program are to 1) Identify and fill gaps in our knowledge about species and population diagnosis, biodiversity, and health of wildlife and their habitats to inform decision making by management agencies and 2) Provide state-of-the-art molecular science applications and protocols for USGS, Department of Interior, and other partners.Tracking Data for Three Large-bodied Gull Species and Hybrids (Larus spp.)
Available here are tracking data of large-bodied gull species and hybrids (Larus species). These data were collected to better understand the migratory movements of these birds and their role in the dispersal of antibiotic resistant bacteria among areas of Alaska and other regions.Blue-winged Teal and Cross Continental Avian Influenza Transmission
This project focused on improving our understanding of the migratory ecology of Blue-winged Teal and their ability to transmit avian influenza or other pathogens across the wild bird – domestic poultry interface.Swan Research
USGS research on swans in Alaska has focused on pathogens, contaminants, and demographic rates in each of the different breeding areas of Alaska. The vastly different migration patterns of swans in Alaska means that there are multiple factors on the wintering grounds and during migration that may influence population size and trends.Tracking Data for Blue-winged Teal (Anas discors)
Available here are tracking data of Blue-winged Teal, a duck species that breeds throughout much of North America and whose wintering range includes neotropical areas of the Caribbean and Central and South America, thus providing a migratory link between the continents of North and South America. These data were collected to better understand the timing and patterns of migratory movement of Blue...Antibiotic Resistant Bacteria in Migratory Birds
Migratory birds, and particularly those using habitats close to human settlements, may be infected with antibiotic resistant bacteria. The USGS is working with public health professionals to understand the role of birds in the maintenance and dispersal of antibiotic resistant bacteria. Additionally, the USGS is investigating how antibiotic resistant bacteria in birds may relate to public and...High Priority Species for Avian Influenza in Alaska
In early 2006, an Alaska Interagency Avian Influenza Working Group was formed to develop a ranking matrix for selecting priority species to be sampled within Alaska. Most wild bird species with populations that utilize areas of both Alaska and Asia were identified and considered in the ranking exercise. Based on scoring criteria, 28 target species were chosen for sampling. Alaska is a... - Data
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Antimicrobial Resistance Testing and qPCR Detection of Antimicrobial Resistance Genes in Surface Water and Gull (Larus spp.) Feces on the Kenai Peninsula, Alaska, 2021
This data set includes information on collections of surface water and fecal samples from wild gulls (Larus spp.) at two locations on the Kenai Peninsula, Alaska, USA. Samples were screened for Escherichia coli (E. coli) and Klebsiella pneumoniae (K. pneumoniae) and tested for resistance to multiple antibiotics.Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl
These data represent mercury contamination, influenza infection, and body condition in 11 species of dabbling and diving ducks in the Pacific Flyway. These data support a USGS lead scientific publication.Temporal Viral Viability Data from Avian Influenza A Viruses Maintained in Alaska Wetlands Under Experimental and Environmental Conditions
Data sets containing: (1) sample collection and influenza A virus (IAV) screening information for wild ducks, (2) water temperature data from four wetlands within the Izembek National Wildlife Refuge in Alaska, USA (3) water quality measurement from four wetlands within the Izembek National Wildlife Refuge in Alaska, USA, (4) genetic sequence data for IAVs recovered from replicate samples of wildBlood Parasite Infection, Body Mass, and Survival Data from Emperor Geese (Anser canagicus), Yukon-Kuskokwim Delta, Alaska, 2006-2016
This dataset provides two tables of blood parasite infection data collected from Emperor Geese (Anser canagicus) on Yukon-Kuskokwim Delta, Alaska, 2006-2016. Three genera of blood parasites (Leucocytozoon, Haemoproteus, Plasmodium) were detected by molecular sequencing of a 479 bp fragment of the Cytochrome-b gene. The data provided in the tables are: 1) age, sex, mass, infection status, and NCBIBlood Parasite Infection Data from Emperor Geese (Anser canagicus) and Cackling Geese (Branta hutchinsii minima), Yukon-Kuskokwim Delta, Alaska, 1998-2014
This dataset includes one table of blood parasite (hematozoa) infection data from 197 Emperor Geese (Anser canagicus) and 110 Cackling Geese (Branta hutchinsii minima) sampled on the Yukon-Kuskokwim Delta, Alaska, in 1998 and 2014. Three genera of blood parasites (Leucocytozoon, Haemoproteus, Plasmodium) were detected by molecular sequencing of a 479 bp fragment of the Cytochrome-b gene. The tableTracking Data for Three Large-bodied Gull Species and Hybrids (Larus spp.)
This metadata document describes the data contained in the "processedData" folder of this data package. This data package contains all data collected by the Argos System from 6 satellite transmitters attached to Glaucous-winged gulls on Middleton Island and 42 Argos-linked GPS satellite transmitters attached to three species of large-bodied gulls (genus Larus) and hybrids thereof, captured at landData for Continental-Scale Dispersal of Antimicrobial Resistant Bacteria by Alaska Landfill-Foraging Gulls
This data set includes information on collections of fecal samples from wild gulls (Larus spp.) at seven locations in Alaska, USA. Samples were screened for Escherichia coli (E. coli) and tested for resistance to multiple antibiotics.Temporal Viral Viability Data from Avian Influenza A Viruses Maintained in North American Wetlands Under Experimental and Environmental Conditions
Data sets containing: (1) sample collection and influenza A virus (IAV) screening information for wild ducks, (2) water temperature data for six North American wetlands, (3) water quality measurement from those wetlands, (4) laboratory-based study of viral viability using Minnesota wetland water, (5) naive mallards challenged experimentally with IAVs identified from the field experiment, and (6) gWaterfowl occurrence and residence time as indicators of H5 and H7 avian in?uenza in North American Poultry
This data release contains model outputs depicting the probability of an H5 or H7 avian influenza outbreak at any given point in the continental United States for each week of the year.Influenza A Virus Persistence Data from an Urban Wetland in Anchorage, Alaska, 2018-2019
This dataset is three tables with details of samples and aliquots of waterfowl feces deposited in filtered surface water collected from an urban waterbody in Anchorage, Alaska in 2018-2019. Sample vials were submerged underwater in the same waterbody from which the samples were collected and the samples were tested for the presence and viability of influenza A virus. Temperature data and water cheDNA Microsatellite Markers for Northern Fulmar (Fulmaris glacialis) and Cross-species Amplification in Select Seabird Species
This data set is comprised of one table with sampling information and allele sizes for 69 individual Northern Fulmars (Fulmarus glacialis) from Chagulak Island, Alaska and Hafnarey Island, Iceland. Fulmar allele sizes are provided for 10 previously published and 26 novel microsatellite loci. Additionally, allele sizes for the 26 microsatellite loci developed in this study are included for Arctic TTracking Data for Blue-winged Teal (Anas discors)
This metadata document describes the data contained in the "rawData" folder of this data package. This data package contains all data collected by the Argos System from 42 satellite transmitters attached to Blue-winged Teal ducks on their breeding range in Saskatchewan and Alberta (August 2013) and spring staging areas in Texas and Louisiana (March 2015). Five data files are included in the "rawDa - Multimedia
- Publications
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Avian influenza in wild birds
Influenza A viruses (IAVs)maintained among wild waterfowl, gulls, shorebirds, and some seabirds, and typically do not cause disease. Some avian-origin IAVs that have previously spilled over into domestic poultry have developed a highly pathogenic phenotype and have become important pathogens affecting both wild birds and poultry. These avian-origin IAVs have important implications to the productAuthorsAndrew M. RameyBaiting and banding: Expert opinion on how bait trapping may influence the occurrence of highly pathogenic avian influenza (HPAI) among dabbling ducks
A Eurasian lineage highly pathogenic avian influenza virus (HPAIV) of the clade 2.3.4.4b (Goose/Guangdong lineage) was detected in migratory bird populations in North America in December 2021, and it, along with its reassortants, have since caused wild and domestic bird outbreaks across the continent. Relative to previous outbreaks, HPAIV cases among wild birds in 2022 exhibited wider geographic eAuthorsJennifer F. Provencher, Alana A. E. Wilcox, Samantha E. J. Gibbs, Lesley-Anne Howes, Mark L. Mallory, Margo J. Pybus, Andrew M. Ramey, Eric T. Reed, Chris Sharp, Catherine Soos, Iga Stasiak, Jim O. LeafloorEnvironmental antimicrobial resistance gene detection from wild bird habitats using two methods: A commercially available culture-independent qPCR assay and culture of indicator bacteria followed by whole-genome sequencing
ObjectivesA variety of methods have been developed to detect antimicrobial resistance (AMR) in different environments to better understand the evolution and dissemination of this public health threat. Comparisons of results generated using different AMR detection methods, such as quantitative PCR (qPCR) and whole-genome sequencing (WGS), are often imperfect, and few studies have analysed samples iAuthorsChristina Ahlstrom, Laura Celeste Scott, Hanna Woksepp, Jonas Bonnedahl, Andrew M. RameyExchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches
Carbapenem-resistant Enterobacteriaceae (CRE) are a global threat to human health and are increasingly being isolated from nonclinical settings. OXA-48-producing Escherichia coli sequence type 38 (ST38) is the most frequently reported CRE type in wild birds and has been detected in gulls or storks in North America, Europe, Asia, and Africa. The epidemiology and evolution of CRE in wildlife and humAuthorsChristina Ahlstrom, Hanna Woksepp, Linus Sandegren, Andrew M. Ramey, Jonas BonnedahlWaterfowl recently infected with low pathogenic avian influenza exhibit reduced local movement and delayed migration
Understanding relationships between infection and wildlife movement patterns is important for predicting pathogen spread, especially for multispecies pathogens and those that can spread to humans and domestic animals, such as avian influenza viruses (AIVs). Although infection with low pathogenic AIVs is generally considered asymptomatic in wild birds, prior work has shown that influenza-infected bAuthorsClaire S. Teitelbaum, Michael L. Casazza, Fiona McDuie, Susan E. W. De La Cruz, Cory T. Overton, Laurie Anne Hall, Elliott Matchett, Josh T. Ackerman, Jeffery D. Sullivan, Andrew M. Ramey, Diann ProsserSurvey for selected parasites in Alaska brown bears (Ursus arctos)
To assess infection with or exposure to endo- and ectoparasites in Alaska brown bears (Ursus arctos), blood and fecal samples were collected during 2013–17 from five locations: Gates of the Arctic National Park and Preserve; Katmai National Park; Lake Clark National Park and Preserve; Yakutat Forelands; and Kodiak Island. Standard fecal centrifugal flotation was used to screen for gastrointestinalAuthorsEllen Haynes, Sarah Coker, Michael J. Yabsley, Kevin Niedrighaus, Andrew M. Ramey, Guilherme Verocai, Grant Hilderbrant, Kyle Joly, Dave Gustine, Buck Mangipane, William Leacock, Anthony P. Crupi, Christopher A. ClevelandA serological survey of Francisella tularensis exposure in wildlife on the Arctic Coastal Plain of Alaska
Tularemia is an infectious zoonotic disease caused by one of several subspecies of Francisella tularensis bacteria. Infections by F. tularensis are common throughout the northern hemisphere and have been detected in more than 250 wildlife species. In Alaska, US, where the pathogen was first identified in 1938, studies have identified F. tularensis antibodies in a diverse suite of taxa, including iAuthorsMatthew M. Smith, Caroline R. Van Hemert, Todd C. Atwood, David R. Sinnett, Jerry W. Hupp, Brandt W Meixell, David D. Gustine, Layne G. Adams, Andrew M. RameyAvian influenza antibody prevalence increases with mercury contamination in wild waterfowl
Environmental contamination is widespread and can negatively impact wildlife health. Some contaminants, including heavy metals, have immunosuppressive effects, but prior studies have rarely measured contamination and disease simultaneously, which limits our understanding of how contaminants and pathogens interact to influence wildlife health. Here, we measured mercury concentrations, influenza infAuthorsClaire Stewart Teitelbaum, Josh T. Ackerman, Mason A. Hill, Jaqueline M. Satter, Michael L. Casazza, Susan E. W. De La Cruz, Walter M. Boyce, Evan James Buck, John M. Eadie, Mark P. Herzog, Elliott Matchett, Cory T. Overton, Sarah H. Peterson, Magdalena Plancarte, Andrew M. Ramey, Jeffery D. Sullivan, Diann ProsserSpatiotemporal changes in influenza A virus prevalence among wild waterfowl inhabiting the continental United States throughout the annual cycle
Avian influenza viruses can pose serious risks to agricultural production, human health, and wildlife. An understanding of viruses in wild reservoir species across time and space is important to informing surveillance programs, risk models, and potential population impacts for vulnerable species. Although it is recognized that influenza A virus prevalence peaks in reservoir waterfowl in late summeAuthorsCody M. Kent, Andrew M. Ramey, Josh T. Ackerman, Justin Bahl, Sarah N. Bevins, Andrew S. Bowman, Walter Boyce, Carol Cardona, Michael L. Casazza, Troy D. Cline, Susan E. W. De La Cruz, Jeffrey S. Hall, Nichola J. Hill, Hon S. Ip, Scott Krauss, Jennifer M. Mullinax, Jacqueline M. Nolting, Magdalena Plancarte, Rebecca L. Poulson, Jonathan A. Runstadler, Richard D. Slemons, David E. Stallknecht, Jeffery D. Sullivan, John Y. Takekawa, Richard J. Webby, Robert G. Webster, Diann J. ProsserProceedings of the Highly Pathogenic Avian Influenza and Wild Birds Webinar Series, August 2–5, 2021
In light of ongoing and geographically widespread highly pathogenic avian influenza (HPAI) outbreaks in wild birds throughout much of Eurasia during 2020–21, the Interagency Steering Committee for Avian Influenza Surveillance in Wild Migratory Birds disseminated an informational memorandum in January 2021 to highlight the need for enhanced surveillance and heightened awareness in North America. ThAuthorsM. Camille Hopkins, J. Russ Mason, Giavanna Haddock, Andrew M. RameyAntibiotic resistance in free-ranging wildlife
In this chapter, we provide an overview of antimicrobial resistant (AMR) bacteria in wildlife through the presentation of general trends of occurrence among both captive and free-ranging wild animal populations, discussion of importance to human health and wildlife conservation, and identification of priority areas for future research and monitoring efforts. Once most commonly identified in humanAuthorsAndrew M. Ramey, Christina AhlstromHighly pathogenic avian influenza (HPAI): An emerging disease threat in North America
Highly pathogenic avian influenza (HPAI) is an ecologically and economically significant avian disease that is quickly spreading among wild and domestic birds throughout North America. In this blog post, we provide information and resources that can help you to be informed, be prepared, and be ready to take appropriate action should you observe wild birds that may be affected by HPAI.AuthorsAndrew M. Ramey, Colleen M. Handel - News
*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government