Fish and Aquatic Species Publications
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Filter Total Items: 322
Behavior and movement of smallmouth bass (Micropterus dolomieu) in the forebay of Bonneville Dam, Columbia River, August–December 2020
A telemetry study was conducted during August–December 2020 to evaluate behavior and movement patterns of adult smallmouth bass (Micropterus dolomieu) in the forebay of Bonneville Dam, Washington. A total of 40 smallmouth bass were collected, tagged, and released during August–September in seven distinct areas of the dam forebay and monitored until mid-December. Movement data from 36 tagged smallm
Authors
Tobias J. Kock, Gabriel S. Hansen, Scott D. Evans
Ontogeny of eDNA shedding during early development in Chinook Salmon (Oncorhynchus tshawytscha)
Knowledge of the timing of major life history events in aquatic species is important for informing conservation and resource management planning. Accordingly, surveys of environmental DNA (eDNA) have been performed to determine the efficacy of eDNA for providing information on life history events, primarily focusing on the timing of events associated with spawning, and these studies have proved su
Authors
Carl Ostberg, Dorothy M. Chase
Avian predation of juvenile Lost River and Shortnose Suckers in Upper Klamath Lake: An assessment of Sucker assisted rearing program releases during 2018–2020
To bolster recruitment in Endangered Species Act (ESA) listed Lost River Suckers (Deltistes luxatus) and Shortnose Suckers (Chasmistes brevirostris) in the Upper Klamath Basin (UKB), the U.S. Fish and Wildlife Service (USFWS) and its partners have implemented the Sucker Assisted Rearing Program (SARP). As part of this program, juvenile suckers were reared in captivity, implanted with passive integ
Authors
Allen Evans, Quinn Payton, Nathan V Banet, Bradley M. Cramer, Caylen Kelsey, David A. Hewitt
miR133b microinjection during early development targets transcripts of sardiomyocyte ion channels and induces oil-like cardiotoxicity in zebrafish (Danio rerio) embryos
Previous studies have shown that altered expression of a family of small noncoding RNAs (microRNAs, or miRs) regulates the expression of downstream mRNAs and is associated with diseases and developmental disorders. miR133b is highly expressed in mammalian cardiac and skeletal muscle, and aberrant expression is associated with cardiac disorders and electrophysiological changes in cardiomyocytes. Si
Authors
Justin Blaine Greer, Jason T. Magnuson, Victoria McGruer, Le Qian, Subham Dasgupta, David C. Volz, Daniel Schlenk
Monitoring native, resident nonsalmonids for the incidence of gas bubble trauma downstream of Snake and Columbia River Dams, 2021
In 2020, a new spill program was implemented to aid the downstream passage of juvenile
salmonids at mainstem dams on the Snake and Columbia rivers. Under this program, the total
dissolved gas (TDG) cap was increased to 125% and monitoring of native, resident nonsalmonid
(NRN) fishes for gas bubble trauma (GBT) became a requirement. The primary objective of this
work was to measure the incidenc
Authors
Kenneth Tiffan, Collin Smith, Nicole Joy Eller, Joe J. Warren
Behavior and survival of hatchery rainbow trout (Oncorhynchus mykiss) in the upper Cowlitz River Basin, Washington, 2013 and 2017
A two-year study (2013 and 2017) was conducted to determine if annual releases of hatchery rainbow trout (resident Oncorhynchus mykiss) in the upper Cowlitz River Basin, Washington adversely affected anadromous fish in the basin. Rainbow trout tagged with radio transmitters were monitored after release to describe movement patterns, entrainment rates at Cowlitz Falls Dam, and survival. Additionall
Authors
Amy C. Hansen, Tobias J. Kock, Brian K. Ekstrom, Theresa L. Liedtke
Water quality, instream habitat, and the distribution of suckers in the upper Lost River watershed of Oregon and California, summer 2018
Executive SummaryEndangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers primarily use lotic habitats during the spring spawning season in the Upper Klamath Lake watershed. However, summer-time surveys of the upper Lost River watershed in 1972, 1975 and 1989–90 indicated that adults of both endangered species use tributaries of Clear Lake Reservoir (hereafter: Cle
Authors
Barbara A. Martin, Summer M. Burdick, Stephen T. Staiger, Caylen M. Kelsey
Evaluation of movement and survival of juvenile steelhead (Oncorhynchus mykiss) and coho salmon (Oncorhynchus kisutch) in the Klickitat River, Washington, 2018–2019
A 2-year telemetry study was conducted April–July in 2018 and 2019 to evaluate migration behavior and survival of juvenile steelhead (Oncorhynchus mykiss) and coho salmon (O. kisutch) in the Klickitat River, Washington. A total of 612 natural-origin steelhead, collected in a smolt trap on the Klickitat River, were tagged, released, and monitored as they outmigrated through the lower 17 kilometers
Authors
Scott D. Evans, David S. Lindley, Tobias J. Kock, Amy C. Hansen, Russell W. Perry, Joseph S Zendt, Nicolas Romero
An experimental evaluation of the efficacy of imaging flow cytometry (FlowCam) for detecting invasive Dreissened and Corbiculid bivalve veligers
Zebra (Dreissena polymorpha) and quagga (D. bugensis) mussels, first introduced from central Asia into the Great Lakes of North America in the late 1980s, have crossed the continental divide and more recently spread across western North America. At the same time, several new technologies have been developed for the early detection of dreissenids, including the FlowCam, a digital imaging-in-flow in
Authors
Whitney Hassett, Julie Zimmerman, Gretchen Rollwagen-Bollens, Stephen M. Bollens, Timothy D. Counihan
Physiological and nutritional constraints on zooplankton productivity due to eutrophication and climate change predicted using a resource-based modeling approach
Emerging evidence suggests that zooplankton production is affected by physiological and nutritional constraints due to climate change and eutrophication, which in turn could have broad implications for food-web dynamics and fisheries production. In this study, we developed a resource-based zooplankton production dynamics model that causally links freshwater cladoceran and copepod daily production-
Authors
Chen Zhang, Michael T. Brett, Jens M Nielsen, George B Arhonditsis, Ashley P Ballantyne, Jackie L Carter, Jacob Kann, Dörthe C Müller-Navarra, Daniel E. Schindler, Jason D. Stockwell, Monika Winder, David Beauchamp
Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a m
Authors
John Hansen, Karina Ray, Po-Jui Chen, Susan Yun, Diane G. Elliott, Carla M. Conway, Michael Culcutt, Maureen K. Purcell, Timothy J Welch, John Patrick Bellah, Ellie Maureen Dalsky, Justin Blaine Greer, Esteban Soto
Annual recurrences of viral hemorrhagic septicemia epizootics in age 0 Pacific herring Clupea pallasii Valenciennes, 1847
Throughout a 20 year biosurveillance period, viral hemorrhagic septicemia virus was isolated in low titers from only 6/7355 opportunistically sampled adult Pacific herring, reflecting the typical endemic phase of the disease when the virus persists covertly. However, more focused surveillance efforts identified the presence of disease hot spots occurring among juvenile life history stages from cer
Authors
Paul Hershberger, Theodore R. Meyers, Jacob L. Gregg, Maya Groner, Sophie Amanda Hall, Hiruni T. Jayasekera, Ashley MacKenzie, Abigail S. Neat, Ella N. Piatt, Kyle A. Garver
From drought to deluge: Spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish
We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to efficiently estimate
Authors
Dalton Hance, Russell Perry, Adam Pope, Arnold J. Ammann, Jason L. Hassrick, Gabriel S. Hansen
Adult sockeye salmon responses to transplanting upstream of an impassable dam
The Yakama Nation manages a program for reintroducing Sockeye Salmon Oncorhynchus nerka upstream of Cle Elum Dam in the Yakima River basin. The program involves transplanting of a mix of adult Sockeye Salmon from two middle Columbia River donor stocks, Lake Wenatchee (WEN) and Osoyoos Lake (OSO), with the goal of establishing a self-sustaining population in the basin. In 2017, a subset of the tran
Authors
Tobias Kock, Scott D. Evans, Brian P. Saluskin, Andrew P. Matala, Richard Visser, Mark.V. Johnston, Peter F. Galbreath, Adam Pope
Evaluation of factors affecting migration success of adult sockeye salmon (Oncorhynchus nerka) in the Yakima River, Washington, 2020
A study was conducted during June–October 2020 to evaluate factors affecting the migration success of adult sockeye salmon (Oncorhynchus nerka) in the Yakima River, Washington. A total of 144 adult sockeye salmon were tagged and released during the study. Most fish (112 fish) were collected, tagged with passive integrated transponder (PIT), and released at the mouth of the Yakima River. The remain
Authors
Tobias J. Kock, Amy C. Hansen, Scott D. Evans, Richard Visser, Brian Saluskin, Andrew Matala, Paul Hoffarth
Taxonomic, temporal, and spatial variations in zooplankton fatty acid composition in Puget Sound, WA, USA
Fatty acid (FA) content and composition of zooplankton in Puget Sound, Washington (USA) was studied to investigate the nutritional quality of diverse zooplankton prey for juvenile salmon (Oncorhynchus spp.) in terms of their essential fatty acid (EFA) content. The study focus was on eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (ARA) as these are key FA needed to ma
Authors
Minna Hiltunen, Ursula Strandberg, Michael T. Brett, Amanda K. Winans, David Beauchamp, Miika Kotila, Julie E. Keister
Herring Disease Program - Annual Project Report 2012011-E, February 1, 2010-January 31, 2021
We will investigate fish health factors that may be contributing to the failed recovery of Pacific herring populations in Prince William Sound. Field samples will provide infection and disease prevalence data from Prince William Sound and Sitka Sound to inform the age structured assessment (ASA) model, serological data will indicate the prior exposure history and future susceptibility of herring t
Authors
Paul Hershberger, Maureen K. Purcell
Temperature variation and host immunity regulate viral persistence in a salmonid host
Environmental variation has important effects on host–pathogen interactions, affecting large-scale ecological processes such as the severity and frequency of epidemics. However, less is known about how the environment interacts with host immunity to modulate virus fitness within hosts. Here, we studied the interaction between host immune responses and water temperature on the long-term persistence
Authors
David J. Páez, Rachel L. Powers, Peng Jia, Natalia Ballesteros, Gael Kurath, Kerry A. Naish, Maureen K. Purcell
Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs
Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of a
Authors
Jason G. Romine, Russell Perry, Paul Stumpner, Aaron R. Blake, Jon R. Burau
Long-term shedding from fully convalesced individuals indicates that Pacific herring are a reservoir for viral hemorrhagic septicemia virus
Processes that allow viral hemorrhagic septicemia (VHS) virus to persist in the marine environment remain enigmatic, owing largely to the presence of covert and cryptic infections in marine fishes during typical sub-epizootic periods. As such, marine host reservoirs for VHS virus have not been fully demonstrated, nor have the mechanism(s) by which infected hosts contribute to virus perpetuation an
Authors
Paul Hershberger, Ashley MacKenzie, Jacob L. Gregg, M. D. Wilmot, Rachel L. Powers, Maureen K. Purcell
Dynamics of endangered sucker populations in Clear Lake Reservoir, California
Executive SummaryIn collaboration with the Bureau of Reclamation, the U.S. Geological Survey began a consistent monitoring program for endangered Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Clear Lake Reservoir, California, in fall 2004. The program was intended to improve understanding of the Clear Lake Reservoir populations because they are important
Authors
David A. Hewitt, Brian S. Hayes, Alta C. Harris, Eric C. Janney, Caylen M. Kelsey, Russell W. Perry, Summer M. Burdick