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Publications

Publications from USGS science centers throughout the Southeast Region.

Filter Total Items: 10538

Decadal-scale characteristics of natural and anthropogenic dune morphology along North Carolina Barrier Islands (SE Atlantic Coast) Decadal-scale characteristics of natural and anthropogenic dune morphology along North Carolina Barrier Islands (SE Atlantic Coast)

Dunes offer protection to coastal communities from storms, yet quantitative research characterizing human influences on dune systems across decades and 10–100 km spatial scales constitutes a known data gap. This study analyzed a multidecadal archive of dune crest elevations and positions to map mesoscale spatiotemporal trends in foredune morphology across the barrier island coastline of...
Authors
Alexander C. Seymour, Daniel J. Ciarletta, Kai Alexander Parker, Kara S. Doran, Margaret L. Palmsten

Hyperspectral retrieval of phytoplankton absorption and community composition from NASA’s PACE-OCI in estuarine–coastal waters using a hybrid framework combining mixture-of-experts and Variational Autoencoder Hyperspectral retrieval of phytoplankton absorption and community composition from NASA’s PACE-OCI in estuarine–coastal waters using a hybrid framework combining mixture-of-experts and Variational Autoencoder

Retrieving the phytoplankton absorption coefficient (aphy; m−1), one of the most spectrally rich inherent optical properties, remains challenging in optically complex coastal waters worldwide. Leveraging NASA's new hyperspectral mission, PACE, we introduce Hyper-MoE-VAE, a deep-learning architecture that integrates a Mixture-of-Experts with a Variational Autoencoder to retrieve high...
Authors
Xingyu Bai, Bingqing Liu, Jiang Li, Yuanheng Xiong, Eurico J. D'Sa, Melissa Millman Baustian, Xiaodong Zhang, Brice K. Grunert, Chisom O. Emeghiebo, Cassie Glasspie, Xu Yuan

Short-term estuarine phytoplankton dynamics in response to hurricanes along the Gulf Coast of America: A Variational Autoencoder (VAE) approach with satellite and bio-optical observations Short-term estuarine phytoplankton dynamics in response to hurricanes along the Gulf Coast of America: A Variational Autoencoder (VAE) approach with satellite and bio-optical observations

Hurricanes drive diverse estuarine phytoplankton responses and can trigger cascading ecological and physicochemical impacts. Capturing these short-term dynamics requires high spatiotemporal resolution. Here, we applied a globally-applicable coastal ocean color algorithm, Variational Autoencoder (VAE), to Sentinel-2 MSI imagery for chlorophyll-a (Chl-a) estimation and validated its strong
Authors
Jiang Li, Bingqing Liu, Jiadong Lou, Xu Yuan, Eurico J. D'Sa, Melissa Millman Baustian, Megan La Peyre, Angelina Freeman, Vitor S. Martins, Emad Habib

Erosion potential and flood vulnerability of streams and stream crossings at Acadia National Park, Maine Erosion potential and flood vulnerability of streams and stream crossings at Acadia National Park, Maine

Acadia National Park has had increases in the frequency and magnitude of precipitation in recent years, leading to increased flood flows, stream erosion, and costly infrastructure damage. To improve infrastructure management in a changing climate, the U.S. Geological Survey, in cooperation with the National Park Service, has developed multiple datasets that can help natural resource...
Authors
Ian P. Armstrong, Meghan A. McCallister, Kristina M. Hyslop, Adam J. Benthem

PFAS in our food: From farms and fields to streams and shores PFAS in our food: From farms and fields to streams and shores

The concern of per- and polyfluoroalkyl substances (PFAS) contamination has historically focused on drinking water, but communities and researchers are increasingly realizing that drinking water may not be the only important exposure pathway. PFAS move through surface water, sediments and soils into groundwater, wildlife and even our agricultural systems. Consequently, they affect the...
Authors
Oindrila Ghosh, Jonathan Petali, Erin L. Pulster, Christopher J. McCarthy

A tool to monitor hydrologic conditions on tree islands in the Everglades A tool to monitor hydrologic conditions on tree islands in the Everglades

Tree islands are patchy upland forested habitats in Florida's Everglades that face degradation and disappearance due to altered hydrologic patterns. The U.S. Geological Survey coordinated with the Miccosukee Tribe of Indians of Florida and the Seminole Tribe of Florida to co-develop a decision-support tool based on tree-island hydrologic conditions. Everglades managers can use this tool...
Authors
Saira M. Haider, Craig van der Heiden, Marcel Bozas, Stephanie S. Romañach

Chronic exposure to waterborne nickel significantly reduced growth of juvenile crayfish (Faxonius virilis) Chronic exposure to waterborne nickel significantly reduced growth of juvenile crayfish (Faxonius virilis)

Crayfish are critical functional components of aquatic ecosystems. Previous research has documented adverse effects of mineral extraction on crayfish. Here, we characterize potential risks of mining-derived waterborne nickel (Ni) to crayfish by documenting the effects of dissolved Ni on growth and food consumption of juvenile virile crayfish (Faxonius virilis) in a 28-day chronic...
Authors
Adrian Parr Moore, Mark L. Wildhaber, Zachary D Beaman, Kendell Ray Bennett, Karlie K Ditter, Danielle M. Cleveland, J. Blanton, Tyler J. Grant

Future aquatic invaders of the Northeast U.S.: How climate change, human vectors, and natural history could bring southern and western species north Future aquatic invaders of the Northeast U.S.: How climate change, human vectors, and natural history could bring southern and western species north

As environmental conditions change, land managers are increasingly concerned about the potential for new aquatic invasive species to move into their jurisdictions. Because managers may have limited resources, detecting invasive species early is important as prevention is more effective and less costly than ongoing mitigation of established populations. Tools built to assist early...
Authors
Catherine S. Jarnevich, Peder Engelstad, Shelby K. LeClare, Richard D. Inman, Ian A. Pfingsten, Wesley M. Daniel

Persistence of coral reef structures into the twenty-first century Persistence of coral reef structures into the twenty-first century

Coral reefs provide important socioecological services but are vulnerable to climate change, which shifts the balance between the production and erosion of calcium carbonate (CaCO3). In this Review, we summarize understanding of reef accretion, describe the mechanisms of carbonate production and erosion, and consider the effects of future ocean warming and acidification on key reef...
Authors
Christopher E. Cornwall, Orlando Timmerman, Andreas Andersson, Denisa M. Berbece, Oscar Branson, Steeve Comeau, Travis A. Courtney, Simon D. Donner, Ian. Enochs, Ben P. Harvey, Ashtyn L. Isaak, Holly E. Koch, Cheryl A. Logan, Chris T. Perry, Verena Schoepf, Lauren T. Toth, Alice Webb

Time course of effects and tissue concentrations of 6PPDQ in three sensitive salmonids with additional data for two centrarchid species Time course of effects and tissue concentrations of 6PPDQ in three sensitive salmonids with additional data for two centrarchid species

Studies of 6PPD-quinone (6PPDQ) toxicity have identified both sensitive and resistant salmonid species at environmentally relevant concentrations. However, comparisons between species are complicated by varying testing conditions, which can limit the application to derivation of environmental quality guidelines. Furthermore, few studies have reported 6PPDQ tissue concentrations in fish...
Authors
David J. Soucek, Rebecca A. Dorman, James S. Candrl, Adam H. Moody, Rachael F. Lane, Justin Blaine Greer, John D. Hansen, Jeffery A. Steevens

Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin

The decimation of reefs from stony coral tissue loss disease prompted the use of a topical amoxicillin treatment to prevent coral mortality. Application of this treatment led to concerns about unintentional impacts such as potential alteration of the coral microbiome and possible spread of antibiotic resistance. We used three different methodologies—microbial RNA sequencing, 16S rRNA...
Authors
Karen L. Neely, Christina A. Kellogg, Julie Jenice Voelschow, Allison R. Cauvin, Sydney A.M. Reed, Ewelina Rubin, Julie L. Meyer

PFAS contamination in Florida estuarine fishes: Levels, patterns, and estimated human and ecological health risks PFAS contamination in Florida estuarine fishes: Levels, patterns, and estimated human and ecological health risks

Per- and polyfluoroalkyl substances (PFAS) pose a significant health threat due to their environmental persistence and toxicity. While PFAS contamination is widespread in Florida, the state currently lacks fish consumption advisories (FCAs) for these compounds, despite existing FCAs for legacy pollutants. This study quantified 40 PFAS in edible muscle tissue from 264 fish (16 species)...
Authors
Erin L. Pulster, Devon Firesinger, Jonathan M. Petali, Christopher McCarthy, Douglas H. Adams
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