Publications
Publications from USGS science centers throughout the Southeast Region.
Filter Total Items: 10348
Using DNA barcoding to evaluate freshwater mussel and fish-host relationships in the Flint River (Georgia, USA) Using DNA barcoding to evaluate freshwater mussel and fish-host relationships in the Flint River (Georgia, USA)
Freshwater mussels have a unique life history in which larval mussels (glochidia) act as obligate parasites to fish hosts. Host selectivity may be species specific, and identification of host fish is a critical step in conservation planning for individual mussel species. The Flint River harbors ~23% of the freshwater mussel (order Unionida) diversity in the state of Georgia, USA. Nine...
Authors
Hayley A. Robinson, John P. Wares, Gail M. Cowie, Shayla D. Williams, Ben F Scott, Matthew T. Rowe, Nathan Johnson, Peter D. Hazelton
Object detection-assisted workflow facilitates cryptic snake monitoring Object detection-assisted workflow facilitates cryptic snake monitoring
Camera traps are an important tool used to study rare and cryptic animals, including snakes. Time-lapse photography can be particularly useful for studying snakes that often fail to trigger a camera's infrared motion sensor due to their ectothermic nature. However, the large datasets produced by time-lapse photography require labor-intensive classification, limiting their use in large...
Authors
Storm Miller, Michael Kirkland, Kristen Hart, Robert A. McCleery
Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024 Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024
Microbiome research is revolutionizing human and environmental health, but the value and reuse of microbiome data are significantly hampered by the limited development and adoption of data standards. While several ongoing efforts are aimed at improving microbiome data management, significant gaps still remain in terms of defining and promoting adoption of consensus standards for these...
Authors
Julia Kelliher, Mashael Aljumaah, Sarah R. Bordenstein, J. Rodney Brister, Patrick Chain, JosePablo Dunduore-Arias, Joanne B. Emerson, Vanessa Moreira C. Ferdandes, Roberto Flores, Antonio Gonzalez, Zoe A. Hansen, Eneida L. Hatcher, Scott A. Jackson, Christina A. Kellogg, Ramana Madupu, Cassandra Maria Luz Miller, Chloe Mirzayi, Emmanuel F. Mongodin, Ahmed M. Moustafa, Chris Mungall, Aaron Oliver, Nonia Pariente, Jennifer Pett-Ridge, Sydne Record, Linta Reji, Anna-Louise Reysenbach, Virginia Rich, Lorna Richardson, Lynn M. Schriml, Reed S. Shabman, Maria Sierra, Matthew Sullivan, Punithavathi Sundaramurthy, K. M. Thibault, Luke R. Thompson, Scott W. Tighe, Ethell Vereen, Emiley A. Eloe-Fadrosh
Selenium differentially influences methylmercury retention across mayfly life stages Selenium differentially influences methylmercury retention across mayfly life stages
Though high mercury and selenium concentrations are individually toxic to organisms, there is a hypothesized antagonistic relationship. This potential mercury–selenium interaction is under-studied in aquatic macroinvertebrates, particularly in relation to complex life histories. We examined the proposed effect of selenium on methylmercury accumulation between four life stages for a...
Authors
Jacqueline R. Gerson, Rebecca A. Dorman, Collin A. Eagles-Smith, David Walters
RIce-Net: Integrating ground-based cameras and machine learning for automated river ice detection RIce-Net: Integrating ground-based cameras and machine learning for automated river ice detection
River ice plays a critical role in controlling streamflow in cold regions. The U.S. Geological Survey (USGS) qualifies affected water-level measurements and inferred streamflow by ice conditions at a date later than the day of the actual measurements. This study introduces a novel computer vision-based framework, River Ice-Network (RIce-Net), that uses the USGS nationwide network of...
Authors
Mahmoud Ayyad, Marouane Temini, Mohamed Abdelkader, Moheb Henein, Frank L. Engel, R. Russell Lotspeich, Jack R. Eggleston
Effects of chronic metal exposure and metamorphosis on the microbiomes of larval and adult insects and riparian spiders through the aquatic-riparian food web Effects of chronic metal exposure and metamorphosis on the microbiomes of larval and adult insects and riparian spiders through the aquatic-riparian food web
The macroinvertebrate microbiome controls various aspects of the host's physiology, from regulation of environmental contaminants to reproductive output. Aquatic insects provide critical nutritional subsidies linking aquatic and riparian food webs while simultaneously serving as a contaminant pathway for riparian insectivores in polluted ecosystems. Previous studies have characterized...
Authors
Brittany G. Perrotta, Karen A. Kidd, Amy M. Marcarelli, Gordon Paterson, David Walters
Acute heat stress and the extirpation of a threatened coral species from a remote, subtropical reef system Acute heat stress and the extirpation of a threatened coral species from a remote, subtropical reef system
The ecological significance of the reef-building elkhorn coral, Acropora palmata, is threatened by heat-stress-induced mortality. The intensity and duration of the ocean heatwave affecting Dry Tortugas National Park in the summer of 2023 was historically unprecedented in its early timing and maximum temperatures reached and resulted in 100% A. palmata mortality. To understand the...
Authors
Ava Madeline Thompson, Anastasios Stathakopoulos, Karli J. Hollister, Amelia M. Lynch, Jordan C. Holder, Ilsa B. Kuffner
Tapwater exposures, residential risk, and mitigation in a PFAS-impacted-groundwater community Tapwater exposures, residential risk, and mitigation in a PFAS-impacted-groundwater community
Tapwater (TW) safety and sustainability are priorities in the United States. Per/polyfluoroalkyl substance(s) (PFAS) contamination is a growing public-health concern due to prolific use, widespread TW exposures, and mounting human-health concerns. Historically-rural, actively-urbanizing communities that rely on surficial-aquifer private wells incur elevated risks of unrecognized TW...
Authors
Paul M. Bradley, Kristin M. Romanok, Kelly Smalling, Lee Donahue, Mark P. Gaikowski, Randy K. Hines, Sara E. Breitmeyer, Stephanie E. Gordon, Keith A. Loftin, R. Blaine McCleskey, Shannon M. Meppelink, Molly L. Schreiner
Ecological thresholds and transformations due to climate change: The role of abiotic stress Ecological thresholds and transformations due to climate change: The role of abiotic stress
An ecological threshold is the point at which a comparatively small environmental change triggers an abrupt and disproportionately large ecological response. In the face of accelerating climate change, there is concern that abrupt ecosystem transformations will become more widespread as critical ecological thresholds are crossed. There has been ongoing debate, however, regarding the...
Authors
Michael Osland, John B. Bradford, Lauren Toth, Matthew J. Germino, James Grace, Judith Z. Drexler, Camille L. Stagg, Eric E. Grossman, Karen M. Thorne, Stephanie Romanach, Davina Passeri, Gregory E. Noe, Jessica R. Lacy, Ken Krauss, Kurt P. Kowalski, Glenn R. Guntenspergen, Neil K. Ganju, Nicholas Enwright, Joel A. Carr, Kristin B. Byrd, Kevin Buffington
By
Ecosystems Mission Area, Coastal and Marine Hazards and Resources Program, California Water Science Center, Eastern Ecological Science Center, Florence Bascom Geoscience Center, Forest and Rangeland Ecosystem Science Center, Pacific Coastal and Marine Science Center, Southwest Biological Science Center, St. Petersburg Coastal and Marine Science Center, Western Ecological Research Center (WERC), Western Geographic Science Center, Wetland and Aquatic Research Center , Woods Hole Coastal and Marine Science Center
Multi-Scale Graph Learning for anti-sparse downscaling Multi-Scale Graph Learning for anti-sparse downscaling
Water temperature can vary substantially even across short distances within the same sub-watershed. Accurate prediction of stream water temperature at fine spatial resolutions (i.e., fine scales, ≤ 1 km) enables precise interventions to maintain water quality and protect aquatic habitats. Although spatiotemporal models have made substantial progress in spatially coarse time series...
Authors
Yingda Fan, Runlong Yu, Janet R. Barclay, Alison P. Appling, Yiming Sun, Yiqun Xie, Xiaowei Jia
Behavioral responses of Silver Carp to underwater acoustic deterrent sounds Behavioral responses of Silver Carp to underwater acoustic deterrent sounds
Objective Invasive carps continue to spread across the Mississippi River basin, posing significant ecological risk. Identifying technologies to slow their dispersal is critical. The use of sound has been proposed as a method to modify the behavior of Silver Carp Hypophthalmichthys molitrix, offering a nonstructural deterrent strategy.Methods Silver Carp implanted with acoustic...
Authors
Jacob Faulkner, James J. Wamboldt, Katelyn M. Lawson, John Plumb, Christa M. Woodley, Jessica C. Stanton, Matthew Sholtis, Nicholas M Swyers, Mark Roth, Aaron C. Urbanczyk, Robin D. Calfee, Marybeth K. Brey
Insect pollinator crossing of international border barriers along the U.S.-Mexico border Insect pollinator crossing of international border barriers along the U.S.-Mexico border
Infrastructure along the U.S.-Mexico Border may not be equally permeable to all types of insect pollinators with potential implications for pollen and gene flow between plant populations. Pollinators were observed on their approach to two types of border barriers (slatted and cemented) along the U.S.-Mexico Border from March 2023 to January 2024. Near the barrier, four insect behaviors...
Authors
Beth Middleton