James E McKenna, Jr., PhD (Former Employee)

Background Environmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.Methods We characterized fish eDNA compositions using rapid, low-volume filtering with replicate...

The endangered Silver Chub (Macrhybopsis storeriana, Kirtland 1844) is native to North America and primarily riverine, with the only known large‐lake population in Lake Erie. Once a major component of the Lake Erie fish community, it declined and became nearly extirpated in the mid‐1900s. Recent collections in western Lake Erie suggest that Silver Chub may be able to recover, but their...

Fecundity of fish is influenced by several factors, including body length, condition, population density, and environmental conditions. It follows that fecundity of fish populations can exhibit spatiotemporal variability; thus, periodic quantification of length–fecundity relationships is important for management. We hypothesized that average fecundity of Cisco Coregonus artedi in the...

Abstract Two of the remaining coregonine species in Lake Ontario, cisco (Coregonus artedi) and lake whitefish (C. clupeaformis), spawn in Chaumont Bay, NY. Larvae co-occur in the spring but are difficult to distinguish morphologically. We applied genetic species identification using microsatellite DNA loci of 268 larvae from known locations in nearshore and offshore habitats in Chaumont...

Climate change effects are already significant, but can also magnify other ecological problems. This can be clearly seen in the Laurentian Great Lakes, which have suffered habitat degradation, fishery overharvest and dramatic alterations by invasive species. Thermal changes are expected to cause extensive loss of suitable fish habitat, and changing precipitation patterns will aggravate...

Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study...

Basin-scale assessment of fish habitat in Great Lakes coastal ecosystems would increase our ability to prioritize fish habitat management and restoration actions. As a first step in this direction, we identified key habitat factors associated with highest probability of occurrence for several societally and ecologically important coastal fish species as well as community metrics, using...

Living aquatic communities are largely determined and maintained by the volume and quality of flowing waters, both within lotic systems and in receiving waters of coastal systems. However, flow is one of the most frequently and extensively altered features of rivers and streams; alteration effects are likely to be exacerbated by climate change. Lotic systems vary and different fish...

Owing to the enormity and complexity of the Laurentian Great Lakes, an ecosystem classification is needed to better understand, protect, and manage this largest freshwater ecosystem in the world. Using a combination of statistical analyses, published knowledge, and expert opinion, we identified key driving variables and their ecologically relevant thresholds and delineated and mapped...

Understanding the habitat needs of fish and how these requirements may change seasonally over a 24-h period is important, especially for highly managed sport species. Consequently, we examined the diel and seasonal habitat use of four juvenile salmonid species in streams in the Lake Ontario watershed. For juvenile Atlantic salmon Salmo salarand juvenile rainbow trout Oncorhynchus mykiss

Large-scale conservation efforts can take advantage of modern large databases and regional modeling and assessment methods. However, these broad-scale efforts often assume uniform average habitat conditions and/or species assemblages within stream reaches.

Lower trophic level processes are integral to proper functioning of large aquatic ecosystems and have been disturbed in Lake Ontario by various stressors including exotic species. The invasion of benthic habitats by dreissenid mussels has led to systemic changes and native faunal declines. Size-dependent physiological rates, spatial differences and connectivity, competition, and...