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Publications

Read publications and other informational products to learn more about USGS science occurring in the Mississippi Basin.

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Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database

To advance national efforts for the detection and biosurveillance of aquatic invasive species (AIS), we employed a community consensus process to enable the incorporation of environmental DNA (eDNA) detection data into the U.S. Geological Survey’s (USGS) Nonindigenous Aquatic Species (NAS) database (https://nas.er.usgs.gov/eDNA/). Our goal was to identify minimum standards and best...
Authors
Jason Ferrante, Wesley M. Daniel, Jonathan Adam Freedman, Katy E. Klymus, Matthew Neilson, Yale Passamaneck, Christopher B. Rees, Adam J. Sepulveda, Margaret Hunter

Mismatch between temperature and discharge disrupts spawning cues in a fluvial specialist, blue sucker Cycleptus elongatus Mismatch between temperature and discharge disrupts spawning cues in a fluvial specialist, blue sucker Cycleptus elongatus

Seasonal movements cued by environmental variables are a critical component of riverine fish life history. Life-history events for species such as blue sucker Cycleptus elongatus are likely cued by discharge and temperature and may be disrupted if those life-history events and environmental regimes are mismatched. However, this effect may be dependent upon the habitat occupied when...
Authors
Matthew Ross Acre, Timothy B. Grabowski, Daniel J. Leavitt, Nathan G. Smith, Allison A. Pease, Preston T. Bean, Dakus Geeslin

A characterization of the deep-sea coral and sponge community along the California, Oregon, and Washington coasts using a remotely operated vehicle on the EXPRESS 2019 expedition A characterization of the deep-sea coral and sponge community along the California, Oregon, and Washington coasts using a remotely operated vehicle on the EXPRESS 2019 expedition

NOAA’s Deep-Sea Coral Research Technology Program (DSCRTP) began a 4-year funding initiative for the U.S. West Coast in 2018. The goals of the West Coast Deep-Sea Coral Initiative were to: 1) gather baseline information on DSCS in areas subject to fishing regulation changes prior to the implementation of Amendment 28; 2) improve our understanding of known DSCS bycatch “hot spots”; and 3)...
Authors
Tom Laidig, Diana Watters, Nancy G. Prouty, Meredith Everett, Lizzie Duncan, Liz Clarke, Chris Caldow, Jill R. Bourque, Jennifer McClain Counts, Amanda Demopoulos

Mangroves provide blue carbon ecological value at a low freshwater cost Mangroves provide blue carbon ecological value at a low freshwater cost

“Blue carbon” wetland vegetation has a limited freshwater requirement. One type, mangroves, utilizes less freshwater during transpiration than adjacent terrestrial ecoregions, equating to only 43% (average) to 57% (potential) of evapotranspiration ( ET). Here, we demonstrate that comparative consumptive water use by mangrove vegetation is as much as 2905 kL H2O ha−1 year−1 less than...
Authors
Ken Krauss, Catherine E. Lovelock, Luzhen Chen, Uta Berger, Marilyn C. Ball, Ruth Reef, Ronny Peters, Hannah Bowen, Alejandra G. Vovides, Eric Ward, Marie-Christin Wimmler, Joel A. Carr, Pete Bunting, Jamie A. Duberstein

Water-quality monitoring of the Merrimack River watershed in Massachusetts Water-quality monitoring of the Merrimack River watershed in Massachusetts

The U.S. Geological Survey has been working in collaboration with the Massachusetts Department of Environmental Protection on a project to collect water-quality data from the Merrimack River watershed since April 2020. Twelve locations in the Merrimack River watershed are being sampled for nutrients (such as nitrogen), metals (such as aluminum), Escherichia coli bacteria, and other...
Authors
Kaitlin L. Laabs, Natalie L. Roth, Laura K. Yates

Diet composition and overlap of larval pallid sturgeon and shovelnose sturgeon from the upper Missouri River, USA Diet composition and overlap of larval pallid sturgeon and shovelnose sturgeon from the upper Missouri River, USA

Early life stages of pallid sturgeon Scaphirhynchus albus are rarely collected, and thus information on their biology and ecology is extremely limited. We sampled 75 larval pallid sturgeon (25-110 mm) and 148 larval shovelnose sturgeon S. platorynchus (15-95 mm) by trawl from the upper Missouri River (USA) in 2019. Stomach contents were identified to compare food use and diet overlap...
Authors
Colt Taylor Holley, Patrick Braaten, Barry Poulton, Edward J. Heist, Levi Umland, Tyler M. Haddix

The first assessment of the genetic diversity and structure of the endangered West Indian manatee in Cuba The first assessment of the genetic diversity and structure of the endangered West Indian manatee in Cuba

The coastal waters of Cuba are home to a small, endangered population of West Indian manatee, which would benefit from a comprehensive characterization of the population’s genetic variation. We conducted the first genetic assessment of Cuban manatees to determine the extent of the population's genetic structure and characterize the neutral genetic diversity among regions within the...
Authors
Anmari Alvarez-Aleman, Margaret Hunter, Thomas K. Frazer, James A. Powell, Eddy G. Alfonso, James D. Austin

Optical properties of dissolved organic matter in throughfall and stemflow vary across tree species and season in a temperate headwater forest Optical properties of dissolved organic matter in throughfall and stemflow vary across tree species and season in a temperate headwater forest

Tree-derived dissolved organic matter (DOM) comprises a significant carbon flux within forested watersheds. Few studies have assessed the optical properties of tree-derived DOM. To increase understanding of the factors controlling tree-derived DOM quality, we measured DOM optical properties, dissolved organic carbon (DOC) and calcium concentrations in throughfall and stemflow for 17...
Authors
Kevin A Ryan, Thomas Adler, Ann T. Chalmers, Julia Perdrial, Stephen Sebestyen, James B. Shanley, Aron Stubbins

Migration and energetics model predicts delayed migration and likely starvation in oiled waterbirds Migration and energetics model predicts delayed migration and likely starvation in oiled waterbirds

Oil spills can inflict mortality and injury on bird populations; many of these deaths involve starvation resulting from thermoregulatory costs incurred by oiling of birds’ feathers. However, the fates and responses of sublethally oiled birds are poorly known. Due to this knowledge gap and the potential for birds to die far from the spill site, resource risk and injury assessors need...
Authors
Benjamin M West, Mark L. Wildhaber, Kevin J. Aagaard, Wayne E. Thogmartin, Adrian Parr Moore, Michael J. Hooper

Ontogenetic development of pallid sturgeon (Scaphirhynchus albus) and shovelnose sturgeon (Scaphirhynchus platorynchus) from hatch through yolk absorption Ontogenetic development of pallid sturgeon (Scaphirhynchus albus) and shovelnose sturgeon (Scaphirhynchus platorynchus) from hatch through yolk absorption

Sturgeons have a complex free-embryo period extending from hatch to the initiation of exogenous feeding. Although available for some sturgeon species of the genus Acipenser, descriptions of the developmental stages of free embryos of the genus Scaphirhynchus are lacking. We characterised the ontogenetic development of pallid sturgeon (Scaphirhynchus albus) and shovelnose sturgeon (S...
Authors
Kimberly Chojnacki, Marlene J Dodson, Amy E. George, James Candrl, Aaron J. Delonay

Probiotics beyond the farm: Benefits, costs, and considerations of using antibiotic alternatives in livestock Probiotics beyond the farm: Benefits, costs, and considerations of using antibiotic alternatives in livestock

The increasing global expansion of antimicrobial resistant infections warrants the development of effective antibiotic alternative therapies, particularly for use in livestock production, an agricultural sector that is perceived to disproportionately contribute to the antimicrobial resistance (AMR) crisis by consuming nearly two-thirds of the global antibiotic supply. Probiotics and...
Authors
Kyle R. Leistikow, Rachelle Elaine Beattie, Krassimira R. Hristova

Are existing modeling tools useful to evaluate outcomes in mangrove restoration and rehabilitation projects? A minireview Are existing modeling tools useful to evaluate outcomes in mangrove restoration and rehabilitation projects? A minireview

Ecosystem modeling is a critical process for understanding complex systems at spatiotemporal scales needed to conserve, manage, and restore ecosystem services (ESs). Although mangrove wetlands are sources of ESs worth billions of dollars, there is a lack of modeling tools. This is reflected in our lack of understanding of mangroves’ functional and structural attributes. Here, we discuss...
Authors
Victor H. Rivera-Monroy, Xiaochen Zhao, Hongqing Wang, Zuo G. Xue
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