The Sacramento-San Joaquin Delta is part of the San Francisco Estuary, home to a diverse flora and fauna, including several threatened and endangered species, has a large area of prime farmland, and serves as the hub of California's freshwater-delivery system that moves water from the wet north to the dry southern part of the State.

Beginning in the late 1800s, the Delta's vast historical wetlands were drained to make way for agriculture on dry "islands" surrounded by waterways and protected by 1,100 miles of levees. Exposure of previously water-logged wetland peat soils to air caused them to decompose and subside below sea level by 9 to 26 feet or more. The subsided Delta islands are perpetually at risk of flooding in the event of levee breaks or overtopping and many have flooded in the past, causing millions of dollars in damage. As subsidence progresses, the levees must be regularly maintained and periodically raised and strengthened to support the increasing stresses on their banks. Delta island flooding can also interfere with freshwater exports from the Delta.
USGS studies about subsidence in the Delta have focused on rates of subsidence, how the Delta's thick peat soils were created, and ways to mitigate or reverse peat soil degradation. For example, on deeply subsided Twitchell Island in the Delta, the USGS spearheaded the creation of an experimental wetland that, through the growth of marsh plants, "sequestered" or stored carbon, accumulated peat sediments, and reversed subsidence.
Below are other science projects associated with this project.
Decomposition of Organic Soils in the Sacramento-San Joaquin Delta
Low Intensity Chemical Dosing (LICD)
Below are publications associated with this project.
USGS science at work in the San Francisco Bay and Sacramento-San Joaquin Delta estuary
Delta subsidence in California: The sinking heart of the state
Subsidence and carbon fluxes in the Sacramento/San Joaquin Delta, California
Evaluation of selected data to assess the causes of subsidence in the Sacramento-San Joaquin Delta, California
Land subsidence in the Sacramento-San Joaquin Delta, California
Below are data or web applications associated with this project.
Areas of Land Subsidence in California
In California, land subsidence—mostly from groundwater pumping—was first documented by the USGS in the early 20th century. Completion of State and Federal water projects that bring water from California's wet north to its dry south allowed some groundwater aquifers to recover, and subsidence decreased in these areas. Subsidence continues today, sometimes at high rates of more than 1 foot/year.
Central Valley: Drought Indicators
During the recent droughts of 2007-2010 and 2012-2017, groundwater pumping has increased from the combined effects of the drought and land-use changes, re-initiating land subsidence. In order to document historical subsidence and monitor continued changes, the USGS has gathered and interpreted data from a variety of sources.
- Overview
The Sacramento-San Joaquin Delta is part of the San Francisco Estuary, home to a diverse flora and fauna, including several threatened and endangered species, has a large area of prime farmland, and serves as the hub of California's freshwater-delivery system that moves water from the wet north to the dry southern part of the State.
Sources/Usage: Public Domain. Visit Media to see details.A map of subsidence in the Delta based on the leveling and observations of transmission-line foundations, circa 1930s-1990s. The subsidence increases stresses on the levee system, and failure of levees would cause salt water to move further up the Delta system by disrupting favorable gradients. This would degrade the quality of water that is the heart of water supply for California. (Public domain.) Beginning in the late 1800s, the Delta's vast historical wetlands were drained to make way for agriculture on dry "islands" surrounded by waterways and protected by 1,100 miles of levees. Exposure of previously water-logged wetland peat soils to air caused them to decompose and subside below sea level by 9 to 26 feet or more. The subsided Delta islands are perpetually at risk of flooding in the event of levee breaks or overtopping and many have flooded in the past, causing millions of dollars in damage. As subsidence progresses, the levees must be regularly maintained and periodically raised and strengthened to support the increasing stresses on their banks. Delta island flooding can also interfere with freshwater exports from the Delta.
USGS studies about subsidence in the Delta have focused on rates of subsidence, how the Delta's thick peat soils were created, and ways to mitigate or reverse peat soil degradation. For example, on deeply subsided Twitchell Island in the Delta, the USGS spearheaded the creation of an experimental wetland that, through the growth of marsh plants, "sequestered" or stored carbon, accumulated peat sediments, and reversed subsidence.
- Science
Below are other science projects associated with this project.
Decomposition of Organic Soils in the Sacramento-San Joaquin Delta
The Sacramento-San Joaquin Delta of California was once a great tidal freshwater marsh. It is blanketed by peat and peaty alluvium deposited where streams originating in the Sierra Nevada, Coast Ranges, and South Cascade Range enter San Francisco Bay. In the late 1800s, levees were built along the stream channels, and the land thus protected from flooding was drained, cleared, and planted (...Low Intensity Chemical Dosing (LICD)
Rivers, wetlands, and agricultural operations supply natural organic material to the Sacramento-San Joaquin Delta (Delta) and the San Francisco Estuary. This natural organic matter provides many ecosystem benefits, but it also adversely affects drinking water. During drinking water treatment, chlorine added for purposes of pathogen control reacts with dissolved organic carbon (DOC) in the water to... - Publications
Below are publications associated with this project.
USGS science at work in the San Francisco Bay and Sacramento-San Joaquin Delta estuary
The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 million California residents and vast farmlands, as well as key habitat for birds, fish, and other wildlife. To help ensure the health of this crucial estuary, the U.S. Geological Survey, in close cooperation with partner agencies andAuthorsMichelle K. Shouse, Dale A. CoxDelta subsidence in California: The sinking heart of the state
The Sacramento-San Joaquin River Delta of California once was a great tidal freshwater marsh blanketed by peat and peaty alluvium. Beginning in the late 1800s, levees were built along the stream channels, and the land thus protected from flooding was drained, cleared, and planted. Although the Delta is now an exceptionally rich agricultural area (over a $500 million crop value in 1993), its uniqueAuthorsS. E. Ingebritsen, M. E. Ikehara, D. L. Galloway, D. R. JonesSubsidence and carbon fluxes in the Sacramento/San Joaquin Delta, California
The Sacramento/San Joaquin Delta was once tidal marshland and was formed by the confluence of the Sacramento and the San Joaquin Rivers. The delta covers more than 1,000 square miles and is bordered by the major population centers of the San Francisco Bay area, Sacramento, and Stockton (fig. 1). The delta took its current form by the 1930's when drainage of 100 islands and tracts and constructionAuthorsEvaluation of selected data to assess the causes of subsidence in the Sacramento-San Joaquin Delta, California
No abstract available.AuthorsS.A. Rojstaczer, R.E. Hamon, S. J. Deverel, C.A. MasseyLand subsidence in the Sacramento-San Joaquin Delta, California
No abstract available.AuthorsM. E. Ikehara - Web Tools
Below are data or web applications associated with this project.
Areas of Land Subsidence in California
In California, land subsidence—mostly from groundwater pumping—was first documented by the USGS in the early 20th century. Completion of State and Federal water projects that bring water from California's wet north to its dry south allowed some groundwater aquifers to recover, and subsidence decreased in these areas. Subsidence continues today, sometimes at high rates of more than 1 foot/year.
Central Valley: Drought Indicators
During the recent droughts of 2007-2010 and 2012-2017, groundwater pumping has increased from the combined effects of the drought and land-use changes, re-initiating land subsidence. In order to document historical subsidence and monitor continued changes, the USGS has gathered and interpreted data from a variety of sources.