Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
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Hydrophone placement yields high variability in detection of Epinephelus striatus calls at a spawning site. Hydrophone placement yields high variability in detection of Epinephelus striatus calls at a spawning site.
Passive acoustic monitoring is a cost-effective, minimally invasive technology commonly used to study behavior and population dynamics of soniferous fish species. To understand the strengths and limitations of acoustic monitoring for this purpose at fish spawning aggregations (FSA) requires an assessment of the variability in aggregation-associated sounds (AAS) as a function of time...
Authors
Cameron J. Van Horn, Alli C. Candelmo, Scott A. Heppell, Croy R.M. McCoy, Christine V. Pattengill-Semmens, Lynn Waterhouse, Laurent M. Cherubin, J. Christopher Taylor, William Michaels, James Locascio, Ali K. Ibrahim, Brice X. Semmens
Harmless tags or hazardous ads? Investigating the potential for ear tags to increase predation on neonatal ungulates Harmless tags or hazardous ads? Investigating the potential for ear tags to increase predation on neonatal ungulates
Studies involving individually marked animals provide insights predicated on the assumption marked individuals are accurate models of their unmarked counterparts. Taxa-specific and marker-specific examinations are needed to determine if marked animals are suitable models for the parameter(s) being measured. Our objective was to determine if brightly colored ear tags influenced the...
Authors
Matthew T. Turnley, W. Sue Fairbanks, Robert Charles Lonsinger, Michael J. Cherry, Marlin M. Dart, Randy W. DeYoung, Derek P. Hahn, Levi J. Heffelfinger, Celine M.J. Rickels, Evan P. Tanner, H. George Wang, M. Colter Chitwood
The American black bear (Ursus americanus) as an apex predator: Investigating the ecological role of the world’s most abundant large carnivore The American black bear (Ursus americanus) as an apex predator: Investigating the ecological role of the world’s most abundant large carnivore
Introduction American black bears (Ursus americanus) have been documented to have top-down effects, both consumptive (through predation) and nonconsumptive (through fear effects). However, their behavioural and dietary adaptability has led to uncertainty about the conditions under which these may occur.Objectives We aimed to (1) investigate when, where, and how often black bears...
Authors
John M. Nettles, Caroline M. Abramowitz, Wesley W. Boone, Stephen N. Harris, Chloe E. Horton, Meghan P. Keating, Dana L. Nelson, Samantha N. Smith, Katelyn N. Steen, Erin K. Buchholtz, David S. Jachowski
Shrinking channels, growing threats: Habitat degradation from channel narrowing and invasive vegetation in three dryland rivers Shrinking channels, growing threats: Habitat degradation from channel narrowing and invasive vegetation in three dryland rivers
Water development and the proliferation of invasive riparian vegetation have led to widespread habitat loss and simplification of rivers in the western United States, contributing to the imperilment of native fishes. Here, we quantify channel narrowing and vegetation encroachment, which are conspicuous indicators of riverine habitat alteration, along ∼400 km of three dryland tributaries...
Authors
Benjamin J. Miller, Mark C. McKinstry, Peter R. Wilcock, William W. Macfarlane, Steven Bassett, Phaedra Budy, Casey A. Pennock
A single nucleotide polymorphism panel for identifying North American species and hybrids in the genus Morone A single nucleotide polymorphism panel for identifying North American species and hybrids in the genus Morone
Four species of the fish genus Morone exist in North America and are often the focus of management actions, including propagation and stocking of their hybrids. We have developed an amplicon-based single nucleotide polymorphism (SNP) genotyping panel that provides the ability to distinguish all four species and the commonly stocked M. chrysops x M. saxatilis hybrid using a set of 47 SNPs...
Authors
Jared Homola, Hadley I.A. Boehm, Paul Albosta, Craig Paukert
Environmental controls of suppressed fall crop productivity in an agrivoltaic solar array Environmental controls of suppressed fall crop productivity in an agrivoltaic solar array
Globally, agrivoltaics (AV) research has revealed how microclimates created by photovoltaic (PV) panels can be leveraged to promote reciprocal benefits for agricultural land use and PV energy generation. Yet, in regions of the United States where emissions reduction laws are likely to lead to greater PV development on croplands, empirical evaluation of such co-location remain under...
Authors
Matthew A. Sturchio, Dana F. Russell, Jasmine Schmidt, Caroline Marschner, Antonio DiTomasso, Jinwook Kim, Steven Mark Grodsky
Climate and land use drivers of freshwater fish biodiversity in the northeastern United States Climate and land use drivers of freshwater fish biodiversity in the northeastern United States
Freshwater habitats can sustain high biodiversity, but habitat degradation, species invasion, and overexploitation have imperiled freshwater species. The multiple threats to freshwater habitats and changing stream characteristics due to climate change make it challenging to identify the drivers of fish vulnerability, especially given that the importance of drivers may vary by the...
Authors
Jennifer B. Rogers, Graziella Vittoria DiRenzo, Rebecca M. Quiñones, Todd Richards, Allison H. Roy
Valuing recreational fishing using creel survey statistics Valuing recreational fishing using creel survey statistics
Recreation demand analysis has relied on mail and internet surveys to collect information on individual recreators. However, conducting these surveys is costly and time-consuming. Alternative sources that report aggregate visitation may go unused due to a lack of information about trip starting points. We set up and solve a system of equations that predict reservoir visits and the home...
Authors
Luke Boehm, Richard T. Melstrom, Kevin L. Pope
Sinoatrial contracaeciasis in Johnny Darters (Etheostoma nigrum) and Plains Topminnow (Fundulus sciadicus) from the South Platte drainage, Colorado Sinoatrial contracaeciasis in Johnny Darters (Etheostoma nigrum) and Plains Topminnow (Fundulus sciadicus) from the South Platte drainage, Colorado
Intra-sinoatrial nematodes were incidentally recognized in wild-caught Colorado Johnny Darters (Etheostoma nigrum, JD) in 2020–2021 and in Colorado Plains Topminnow (Fundulus sciadicus, PTM) in 2023-2024. PTM and JD were evaluated histologically. Nematodes dissected from PTM were used for morphologic evaluation and molecular identification. The first and second internal transcribed...
Authors
Paula Andrea Schaffer, Ashley K. McGrew, Jessica Henley, Catherine M. Adams, Dana L. Winkelman, Ryan M. Fitzpatrick, Pete Cadmus
Bright spots for advancing ecological understanding and conservation decision-making Bright spots for advancing ecological understanding and conservation decision-making
A lot can be learned by studying bright spots—defined as unexpected positive outcomes. In fields like public health, education, and oncology, identifying factors behind bright spots reveals previously unknown drivers of success that can be replicated elsewhere. This concept is being applied in conservation but is hampered by variations in definitions of bright spots and confusion with...
Authors
Holly Susan Embke, Zachary S. Feiner, Gretchen Hansen, Daniel A. Isermann, Olaf P. Jensen, Christopher I. Rounds, Quinn Smith, M. Jake Vander Zanden
Animal trajectory imputation and uncertainty quantification via deep learning Animal trajectory imputation and uncertainty quantification via deep learning
Imputing missing data in animal trajectories is crucial for understanding animal movements during unobserved periods. However, the traditional methods, such as linear interpolation and the continuous-time correlated random walk model, are often inadequate to capture the complexity of animal movements. Here, we develop a deep learning approach to animal trajectory imputation by a...
Authors
Kehui Yao, Ian P. McGahan, Jun Zhu, Daniel J. Storm, Daniel P. Walsh
Inferring Brown-Capped Rosy-Finch demography and breeding distribution trends from long-term wintering data in New Mexico Inferring Brown-Capped Rosy-Finch demography and breeding distribution trends from long-term wintering data in New Mexico
The three North American Rosy-Finch species (Brown-capped [Leucosticte australis], Black [L. atrata], and Gray-crowned [L. tephrocotis]) are among the most climate-threatened species in the United States. New Mexico is an important location for investigating the effects of climate change because it is the southernmost location in which Brown-capped Rosy-Finches breed and the southernmost...
Authors
Whitney A. Watson, Corrie C. Borgman, Steven Cox, Abigail Jean Lawson