Science and Products
Evaluating the Design of the Waterfowl Breeding Population and Habitat Survey
The Waterfowl Breeding Population and Habitat Survey (WBPHS) is a primary source of waterfowl population status and trend information for management of ducks in North America. The survey has not been reviewed in several decades, and since the last review new analysis approaches and information needs have created a need to reassess the design, scope of inference, and analysis of the survey to...
Population Change and Abundance of Black Ducks and Mallards in Eastern North America
The boreal forest in the northeastern United States and eastern Canada contains most of the breeding range of the American black duck (Anas rubripes). We collaborate with scientists from the U. S. Fish and Wildlife Service to design and analyze waterfowl surveys in this large and often inaccessible area.
Implementing Cross Validation Approaches for Model Selection and Evaluating Goodness of Fit in Complex Hierarchical Models
It is (relatively) easy to construct complex hierarchical models for analysis of the North American Breeding Bird Survey (BBS), but deciding which model best describes population change is difficult. We are developing methods for model selection for BBS and other important survey data sets, and using them to refine our estimates of population change from this important survey.
Design and Analysis of Surveys for Estimation of Temporal and Spatial Change in Animal Populations
Designing and analyzing large-scale animal surveys is an important focus of our research. Although we conduct research into analysis methods for many surveys, the primary focus of this project is to conduct analyses and develop web-based summaries of data from the North American Breeding Bird Survey (BBS).
Hierarchical Models for Estimation of Population Parameters
The Challenge: Much of wildlife research consists of the description of variation in data. Some of the variation results from spatial and temporal change in populations, while some results from biologically irrelevant sampling variation induced by the process of data collection. Distinguishing relevant from irrelevant variation is the first task of statistical analysis, but the job does not end...
Development of Statistical Methods for Biological Applications
The Challenge: Wildlife science and management are guided by data, and it is unquestionably the case that the greatest success occurs when good data are analyzed by good statistical methods.
Managing Free-Roaming Cats at the Patuxent Research Refuge
The Challenge: Free-roaming cats (Felis catus) are nonnative predators of small mammals, songbirds and gamebirds, reptiles, amphibians, and insects. They are also competitors of native predators and vectors for diseases to human and wildlife. The US Fish and Wildlife Service is authorized to remove cats from National Wildlife Refuges. Presently cat trapping on Refuge lands is conducted...
Toxicity of the Non-Steroidal Anti-Inflammatory Drug Diclofenac
One of the hallmarks of non-steroidal anti-inflammatory drugs (NSAID) is the difficulty in predicting potentially toxic effects.Diclofenac is one such NSAID that devastated Asian vulture populations when they fed upon carcasses of livestock treated with the NSAID diclofenac.Because these drugs are widely used, we studied the potential hazard of diclofenac in New World vultures.
Data for "Population Dynamics and Harvest Management of Eastern Mallards"
Data and R Code for manuscript titled "Population Dynamics and Harvest Management of Eastern Mallards"
The North American Breeding Bird Survey, Analysis Results 1966 - 2021
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatio
Phenology effects in the North American Breeding Bird Survey
This data product provides summary information, by species, of changes in relative visibility of birds (phenology effects) through the April - July time period in which the North American Breeding Bird Survey (BBS) is conducted. Data are presented for 408 species of birds. Seasonal phenology effects are presented for selected latitudes and years, documenting changes in visibility and a variety of
The North American Breeding Bird Survey, Analysis Results 1966 - 2019
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatio
The North American Breeding Bird Survey, Analysis Results 1966 - 2018
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatio
The North American Breeding Bird Survey, Analysis Results 1966 - 2017
This data product consists of a database of population change and relative abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented in 6 separate spreadsheets for 2 methods of trend summary and 3 time periods for 548 species of birds. Metadata for the BBS data used to produce these estimates is available from a USGS ftp site (f
Filter Total Items: 44
Filter Total Items: 124
Population dynamics and harvest management of eastern mallards
Managing sustainable harvest of wildlife populations requires regular collection of demographic data and robust estimates of demographic parameters. Estimates can then be used to develop a harvest strategy to guide decision-making. Mallards (Anas platyrhynchos) are an important species in the Atlantic Flyway for many users and they exhibited exponential growth in the eastern United States between
Authors
Anthony J. Roberts, Jeffrey A. Hostetler, Joshua C. Stiller, Patrick K. Devers, William Link
American Woodcock singing-ground survey: Comparison of four models for trend in population size
Wildlife biologists monitor the status and trends of American woodcock Scolopax minor populations in the eastern and central United States and Canada via a singing-ground survey, conducted just after sunset along roadsides in spring. Annual analyses of the survey produce estimates of trend and annual indexes of abundance for 25 states and provinces, management regions, and survey-wide. In recent y
Authors
John R. Sauer, William Link, Mark E Seamans, Rebecca D. Rau
A Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity
Community occupancy models estimate species‐specific parameters while sharing information across species by treating parameters as sampled from a common distribution. When communities consist of discrete groups, shrinkage of estimates towards the community mean can mask differences among groups. Infinite mixture models using a Dirichlet process (DP) distribution, in which the number of latent grou
Authors
Rahel Sollmann, Mitchell Eaton, William Link, Paul Mulundo, Samuel Ayebare, Sarah Prinsloo, Andrew J. Plumptre, D.S. Johnson
Sources of variation in maternal allocation in a long-lived mammal
1.Life history theory predicts allocation of energy to reproduction varies with maternal age, but additional maternal features may be important to the allocation of energy to reproduction.We aimed to characterize age‐specific variation in maternal allocation and assess the relationship between maternal allocation and other static and dynamic maternal features.Mass measurements of 531 mothers and p
Authors
Kaitlin R. Macdonald, Jay J. Rotella, Robert A. Garrott, William A. Link
Model selection for the North American Breeding Bird Survey
The North American Breeding Bird Survey (BBS) provides data that can be used in complex, multiscale analyses of population change, while controlling for scale‐specific nuisance factors. Many alternative models can be fit to the data, but most model selection procedures are not appropriate for hierarchical models. Leave‐one‐out cross‐validation (LOOCV), in which relative model fit is assessed by om
Authors
William A. Link, John R. Sauer, Daniel K Niven
Variation of annual apparent survival and detection rates with age, year, and individual identity in male Weddell seals (Leptonychotes weddellii) from long-term mark-recapture data
Exploring age- and sex-specific survival rates provides insight regarding population behavior and life-history trait evolution, but many population studies exclude males. Accordingly, our understanding of how age-specific patterns of survival, including actuarial senescence, compare between the sexes remains inadequate. Using 35 years of mark-recapture data for 7,516 male Weddell seals (Lepton
Authors
Jamie L. Brusa, Jay J. Rotella, Robert A. Garrott, J. Terrill Paterson, William Link
Consistency counts: Modeling the effects of a change in protocol on Breeding Bird Survey counts
Analysis of North American Breeding Bird Survey (BBS) data requires controls for factors that influence detectability of birds along survey routes. Identifying factors that influence the counting process and incorporating them into analyses is a primary means of limiting bias in estimates of population change. Twedt (2015) implemented an alternative counting protocol on operational and non-rand
Authors
John R. Sauer, William A. Link, David Ziolkowski, Keith L. Pardieck, Daniel J. Twedt
Analysis of population change and movement using robust design removal data
In capture-mark-reencounter studies, Pollock’s robust design combines methods for open populations with methods for closed populations. Open population features of the robust design allow for estimation of rates of death or permanent emigration, and closed population features enhance estimation of population sizes. We describe a similar design, but for use with removal data. Data collection occurs
Authors
William A. Link, Sarah J. Converse, Amy A. Yackel Adams, Nathan J. Hostetter
Variation in the vital rates of an Antarctic marine predator: the role of individual heterogeneity
Variation in life‐history traits such as lifespan and lifetime reproductive output is thought to arise, in part, due to among‐individual differences in the underlying probabilities of survival and reproduction. However, the stochastic nature of demographic processes can also generate considerable variation in fitness‐related traits among otherwise‐identical individuals. An improved understanding o
Authors
J. Terrill Paterson, Jay J. Rotella, William A. Link, Robert A. Garrott
On the reliability of N‐mixture models for count data
N‐mixture models describe count data replicated in time and across sites in terms of abundance N and detectability p. They are popular because they allow inference about N while controlling for factors that influence p without the need for marking animals. Using a capture–recapture perspective, we show that the loss of information that results from not marking animals is critical, making reliable
Authors
Richard J. Barker, Matthew J. Schofield, William A. Link, John R. Sauer
On the robustness of N‐mixture models
N‐mixture models provide an appealing alternative to mark–recapture models, in that they allow for estimation of detection probability and population size from count data, without requiring that individual animals be identified. There is, however, a cost to using the N‐mixture models: inference is very sensitive to the model's assumptions. We consider the effects of three violations of assumptions
Authors
William A. Link, Matthew R. Schofield, Richard J. Barker, John R. Sauer
Model selection for the North American Breeding Bird Survey: A comparison of methods
The North American Breeding Bird Survey (BBS) provides data for >420 bird species at multiple geographic scales over 5 decades. Modern computational methods have facilitated the fitting of complex hierarchical models to these data. It is easy to propose and fit new models, but little attention has been given to model selection. Here, we discuss and illustrate model selection using leave-one-out cr
Authors
William A. Link, John R. Sauer, Daniel Niven
Science and Products
- Science
Evaluating the Design of the Waterfowl Breeding Population and Habitat Survey
The Waterfowl Breeding Population and Habitat Survey (WBPHS) is a primary source of waterfowl population status and trend information for management of ducks in North America. The survey has not been reviewed in several decades, and since the last review new analysis approaches and information needs have created a need to reassess the design, scope of inference, and analysis of the survey to...Population Change and Abundance of Black Ducks and Mallards in Eastern North America
The boreal forest in the northeastern United States and eastern Canada contains most of the breeding range of the American black duck (Anas rubripes). We collaborate with scientists from the U. S. Fish and Wildlife Service to design and analyze waterfowl surveys in this large and often inaccessible area.Implementing Cross Validation Approaches for Model Selection and Evaluating Goodness of Fit in Complex Hierarchical Models
It is (relatively) easy to construct complex hierarchical models for analysis of the North American Breeding Bird Survey (BBS), but deciding which model best describes population change is difficult. We are developing methods for model selection for BBS and other important survey data sets, and using them to refine our estimates of population change from this important survey.Design and Analysis of Surveys for Estimation of Temporal and Spatial Change in Animal Populations
Designing and analyzing large-scale animal surveys is an important focus of our research. Although we conduct research into analysis methods for many surveys, the primary focus of this project is to conduct analyses and develop web-based summaries of data from the North American Breeding Bird Survey (BBS).Hierarchical Models for Estimation of Population Parameters
The Challenge: Much of wildlife research consists of the description of variation in data. Some of the variation results from spatial and temporal change in populations, while some results from biologically irrelevant sampling variation induced by the process of data collection. Distinguishing relevant from irrelevant variation is the first task of statistical analysis, but the job does not end...Development of Statistical Methods for Biological Applications
The Challenge: Wildlife science and management are guided by data, and it is unquestionably the case that the greatest success occurs when good data are analyzed by good statistical methods.Managing Free-Roaming Cats at the Patuxent Research Refuge
The Challenge: Free-roaming cats (Felis catus) are nonnative predators of small mammals, songbirds and gamebirds, reptiles, amphibians, and insects. They are also competitors of native predators and vectors for diseases to human and wildlife. The US Fish and Wildlife Service is authorized to remove cats from National Wildlife Refuges. Presently cat trapping on Refuge lands is conducted...Toxicity of the Non-Steroidal Anti-Inflammatory Drug Diclofenac
One of the hallmarks of non-steroidal anti-inflammatory drugs (NSAID) is the difficulty in predicting potentially toxic effects.Diclofenac is one such NSAID that devastated Asian vulture populations when they fed upon carcasses of livestock treated with the NSAID diclofenac.Because these drugs are widely used, we studied the potential hazard of diclofenac in New World vultures. - Data
Data for "Population Dynamics and Harvest Management of Eastern Mallards"
Data and R Code for manuscript titled "Population Dynamics and Harvest Management of Eastern Mallards"The North American Breeding Bird Survey, Analysis Results 1966 - 2021
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatioPhenology effects in the North American Breeding Bird Survey
This data product provides summary information, by species, of changes in relative visibility of birds (phenology effects) through the April - July time period in which the North American Breeding Bird Survey (BBS) is conducted. Data are presented for 408 species of birds. Seasonal phenology effects are presented for selected latitudes and years, documenting changes in visibility and a variety ofThe North American Breeding Bird Survey, Analysis Results 1966 - 2019
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatioThe North American Breeding Bird Survey, Analysis Results 1966 - 2018
This data product consists of a database of population change and abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented for 548 species of birds in 4 spreadsheets containing trend estimates and annual indices for 2 time periods. Estimates are derived for each species using the 1 of 4 alternative models, and a cross-validatioThe North American Breeding Bird Survey, Analysis Results 1966 - 2017
This data product consists of a database of population change and relative abundance estimates for North American birds, estimated from North American Breeding Bird Survey (BBS) data. Data are presented in 6 separate spreadsheets for 2 methods of trend summary and 3 time periods for 548 species of birds. Metadata for the BBS data used to produce these estimates is available from a USGS ftp site (f - Multimedia
Filter Total Items: 44
- Publications
Filter Total Items: 124
Population dynamics and harvest management of eastern mallards
Managing sustainable harvest of wildlife populations requires regular collection of demographic data and robust estimates of demographic parameters. Estimates can then be used to develop a harvest strategy to guide decision-making. Mallards (Anas platyrhynchos) are an important species in the Atlantic Flyway for many users and they exhibited exponential growth in the eastern United States betweenAuthorsAnthony J. Roberts, Jeffrey A. Hostetler, Joshua C. Stiller, Patrick K. Devers, William LinkAmerican Woodcock singing-ground survey: Comparison of four models for trend in population size
Wildlife biologists monitor the status and trends of American woodcock Scolopax minor populations in the eastern and central United States and Canada via a singing-ground survey, conducted just after sunset along roadsides in spring. Annual analyses of the survey produce estimates of trend and annual indexes of abundance for 25 states and provinces, management regions, and survey-wide. In recent yAuthorsJohn R. Sauer, William Link, Mark E Seamans, Rebecca D. RauA Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity
Community occupancy models estimate species‐specific parameters while sharing information across species by treating parameters as sampled from a common distribution. When communities consist of discrete groups, shrinkage of estimates towards the community mean can mask differences among groups. Infinite mixture models using a Dirichlet process (DP) distribution, in which the number of latent grouAuthorsRahel Sollmann, Mitchell Eaton, William Link, Paul Mulundo, Samuel Ayebare, Sarah Prinsloo, Andrew J. Plumptre, D.S. JohnsonSources of variation in maternal allocation in a long-lived mammal
1.Life history theory predicts allocation of energy to reproduction varies with maternal age, but additional maternal features may be important to the allocation of energy to reproduction.We aimed to characterize age‐specific variation in maternal allocation and assess the relationship between maternal allocation and other static and dynamic maternal features.Mass measurements of 531 mothers and pAuthorsKaitlin R. Macdonald, Jay J. Rotella, Robert A. Garrott, William A. LinkModel selection for the North American Breeding Bird Survey
The North American Breeding Bird Survey (BBS) provides data that can be used in complex, multiscale analyses of population change, while controlling for scale‐specific nuisance factors. Many alternative models can be fit to the data, but most model selection procedures are not appropriate for hierarchical models. Leave‐one‐out cross‐validation (LOOCV), in which relative model fit is assessed by omAuthorsWilliam A. Link, John R. Sauer, Daniel K NivenVariation of annual apparent survival and detection rates with age, year, and individual identity in male Weddell seals (Leptonychotes weddellii) from long-term mark-recapture data
Exploring age- and sex-specific survival rates provides insight regarding population behavior and life-history trait evolution, but many population studies exclude males. Accordingly, our understanding of how age-specific patterns of survival, including actuarial senescence, compare between the sexes remains inadequate. Using 35 years of mark-recapture data for 7,516 male Weddell seals (LeptonAuthorsJamie L. Brusa, Jay J. Rotella, Robert A. Garrott, J. Terrill Paterson, William LinkConsistency counts: Modeling the effects of a change in protocol on Breeding Bird Survey counts
Analysis of North American Breeding Bird Survey (BBS) data requires controls for factors that influence detectability of birds along survey routes. Identifying factors that influence the counting process and incorporating them into analyses is a primary means of limiting bias in estimates of population change. Twedt (2015) implemented an alternative counting protocol on operational and non-randAuthorsJohn R. Sauer, William A. Link, David Ziolkowski, Keith L. Pardieck, Daniel J. TwedtAnalysis of population change and movement using robust design removal data
In capture-mark-reencounter studies, Pollock’s robust design combines methods for open populations with methods for closed populations. Open population features of the robust design allow for estimation of rates of death or permanent emigration, and closed population features enhance estimation of population sizes. We describe a similar design, but for use with removal data. Data collection occursAuthorsWilliam A. Link, Sarah J. Converse, Amy A. Yackel Adams, Nathan J. HostetterVariation in the vital rates of an Antarctic marine predator: the role of individual heterogeneity
Variation in life‐history traits such as lifespan and lifetime reproductive output is thought to arise, in part, due to among‐individual differences in the underlying probabilities of survival and reproduction. However, the stochastic nature of demographic processes can also generate considerable variation in fitness‐related traits among otherwise‐identical individuals. An improved understanding oAuthorsJ. Terrill Paterson, Jay J. Rotella, William A. Link, Robert A. GarrottOn the reliability of N‐mixture models for count data
N‐mixture models describe count data replicated in time and across sites in terms of abundance N and detectability p. They are popular because they allow inference about N while controlling for factors that influence p without the need for marking animals. Using a capture–recapture perspective, we show that the loss of information that results from not marking animals is critical, making reliableAuthorsRichard J. Barker, Matthew J. Schofield, William A. Link, John R. SauerOn the robustness of N‐mixture models
N‐mixture models provide an appealing alternative to mark–recapture models, in that they allow for estimation of detection probability and population size from count data, without requiring that individual animals be identified. There is, however, a cost to using the N‐mixture models: inference is very sensitive to the model's assumptions. We consider the effects of three violations of assumptionsAuthorsWilliam A. Link, Matthew R. Schofield, Richard J. Barker, John R. SauerModel selection for the North American Breeding Bird Survey: A comparison of methods
The North American Breeding Bird Survey (BBS) provides data for >420 bird species at multiple geographic scales over 5 decades. Modern computational methods have facilitated the fitting of complex hierarchical models to these data. It is easy to propose and fit new models, but little attention has been given to model selection. Here, we discuss and illustrate model selection using leave-one-out crAuthorsWilliam A. Link, John R. Sauer, Daniel Niven