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Publications

Below is a sampling of Laboratory for Infectious Disease and the Environment publications.

Filter Total Items: 16

Microbial source tracking and land use associations for antibiotic resistance genes in private wells influenced by human and livestock fecal sources

Antimicrobial resistance is a growing public health problem that requires an integrated approach among human, agricultural, and environmental sectors. However, few studies address all three components simultaneously. We investigated the occurrence of five antibiotic resistance genes (ARGs) and the class 1 integron gene (intI1) in private wells drawing water from a vulnerable aquifer influenced by
Authors
Tucker R. Burch, Joel P. Stokdyk, Aaron Firnstahl, Burney Kieke Jr, Rachel Cook, Sarah Opelt, Sue Spencer, Lisa Durso, Mark A. Borchardt

Assessing private well contamination in Grant, Iowa, and Lafayette Counties, Wisconsin: The southwest Wisconsin groundwater and geology study

Rural residents of Grant, Iowa, and Lafayette Counties in Wisconsin rely on private wells for their water. Contaminants like nitrate and bacteria from septic systems, fertilizer, and manure can contaminate the groundwater that residents use. Groundwater is vulnerable to contamination where the soil layer is thin and the bedrock is fractured, which is the case for much of the study region. This stu
Authors
Joel P. Stokdyk, Mark A. Borchardt, Aaron Firnstahl, Ken Bradbury, Moe Muldoon, Burney A Kieke

Statewide quantitative microbial risk assessment for waterborne viruses, bacteria, and protozoa in public water supply wells in Minnesota

Infection risk from waterborne pathogens can be estimated via quantitative microbial risk assessment (QMRA) and forms an important consideration in the management of public groundwater systems. However, few groundwater QMRAs use site-specific hazard identification and exposure assessment, so prevailing risks in these systems remain poorly defined. We estimated the infection risk for 9 waterborne p
Authors
Tucker R. Burch, Joel P. Stokdyk, Nancy Rice, Anita C. Anderson, James F. Walsh, Sue Spencer, Aaron Firnstahl, Mark A. Borchardt

Sources and risk factors for nitrate and microbial contamination of private household wells in the fractured dolomite aquifer of northeastern Wisconsin

Background:Groundwater quality in the Silurian dolomite aquifer in northeastern Wisconsin, USA, has become contentious as dairy farms and exurban development expand.Objectives:We investigated private household wells in the region, determining the extent, sources, and risk factors of nitrate and microbial contamination.Methods:Total coliforms, Escherichia coli, and nitrate were evaluated by synopti
Authors
Mark A. Borchardt, Joel P. Stokdyk, Burney A Kieke, Maureen A. Muldoon, Susan K. Spencer, Aaron Firnstahl, Davina Bonness, Randall J. Hunt, Tucker R. Burch

Quantitative microbial risk assessment for contaminated private wells in the fractured dolomite aquifer of Kewaunee County, Wisconsin

Background:Private wells are an important source of drinking water in Kewaunee County, Wisconsin. Due to the region’s fractured dolomite aquifer, these wells are vulnerable to contamination by human and zoonotic gastrointestinal pathogens originating from land-applied cattle manure and private septic systems.Objective:We determined the magnitude of the health burden associated with contamination o
Authors
Tucker R. Burch, Joel P. Stokdyk, Susan K. Spencer, Burney A Kieke, Aaron Firnstahl, Maureen A. Muldoon, Mark A. Borchardt

Viral, bacterial, and protozoan pathogens and fecal markers in wells supplying groundwater to public water systems in Minnesota, USA

Drinking water supply wells can be contaminated by a broad range of waterborne pathogens. However, groundwater assessments frequently measure microbial indicators or a single pathogen type, which provides a limited characterization of potential health risk. This study assessed contamination of wells by testing for viral, bacterial, and protozoan pathogens and fecal markers. Wells supplying groundw
Authors
Joel P. Stokdyk, Aaron Firnstahl, James F. Walsh, Susan K. Spencer, Jane R. de Lambert, Anita C. Anderson, Lih-in W. Rezania, Burney A Kieke, Mark A. Borchardt

Septic systems and rainfall influence human fecal markers and indicator organisms occurrence in private wells in southeastern Pennsylvania

In the United States approximately 48 million people are served by private wells. Unlike public water systems, private well water quality is not monitored and there are few studies on the extent and sources of contamination of private wells. We extensively investigated five private wells to understand the variability in microbial contamination, the role of septic systems as sources of contaminatio
Authors
Heather Murphy, Shannon McGinnis, Ryan Blunt, Joel P. Stokdyk, Jingwei Wu, Alexander Cagle, Donna Denno, Susan K. Spencer, Aaron Firnstahl, Mark A. Borchardt

Laboratory for Infectious Disease and the Environment (LIDE)

The Laboratory for Infectious Disease and the Environment (LIDE) studies the occurrence, fate and transport, and health effects of human and agricultural zoonotic pathogens in the environment. The LIDE is an interagency collaborative effort between the U.S. Geological Survey and the U.S. Department of Agriculture-Agricultural Research Service that conducts research to inform decision makers and ad
Authors
Joel P. Stokdyk, Jennifer L. Bruce, Tucker R. Burch, Susan K. Spencer, Aaron Firnstahl, Mark A. Borchardt

Cryptosporidium incidence and surface water influence of groundwater supplying public water systems in Minnesota, USA

Regulations for public water systems (PWS) in the U.S. consider Cryptosporidium a microbial contaminant of surface water supplies. Ground- water is assumed free of Cryptosporidium unless surface water is entering supply wells. We determined the incidence of Cryptosporidium in PWS wells varying in surface water influence. Community and noncommunity PWS wells (n = 145) were sampled (n = 964) and anal
Authors
Joel P. Stokdyk, Susan K. Spencer, James F. Walsh, Jane R. de Lambert, Aaron D. Fimstahl, Anita C. Anderson, Lih-in W. Rezania, Mark A. Borchardt

Automated time-series measurement of microbial concentrations in groundwater-derived water supplies

Fecal contamination by human and animal pathogens, including viruses, bacteria, and protozoa, is a potential human health hazard, especially with regards to drinking water. Pathogen occurrence in groundwater varies considerably in space and time, which can be difficult to characterize as sampling typically requires hundreds of liters of water to be passed through a filter. Here we describe the des
Authors
David W. Owens, Randall J. Hunt, Aaron Firnstahl, Maureen A. Muldoon, Mark A. Borchardt

Human Bacteroides and total coliforms as indicators of recent combined sewer overflows and rain events in urban creeks

Combined sewer overflows (CSOs) are a known source of human fecal pollution and human pathogens in urban water bodies, which may present a significant public health threat. To monitor human fecal contamination in water, bacterial fecal indicator organisms (FIOs) are traditionally used. However, because FIOs are not specific to human sources and do not correlate with human pathogens, alternative fe
Authors
Shannon McGinnis, Susan K. Spencer, Aaron Firnstahl, Joel P. Stokdyk, Mark A. Borchardt, David McCarthy, Heather Murphy

Quantitative microbial risk assessment for spray irrigation of dairy manure based on an empirical fate and transport model

BACKGROUND: Spray irrigation for land-applying livestock manure is increasing in the United States as farms become larger and economies of scale make manure irrigation affordable. Human health risks from exposure to zoonotic pathogens aerosolized during manure irrigation are not well understood. OBJECTIVES: We aimed to a) estimate human health risks due to aerosolized zoonotic pathogens downwind of
Authors
Tucker R. Burch, Susan K. Spencer, Joel P. Stokdyk, Burney A Kieke, Rebecca A Larson, Aaron Firnstahl, Ana M Rule, Mark A. Borchardt