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Publications

Below is a sampling of Laboratory for Infectious Disease and the Environment publications.

Filter Total Items: 26

Detection of viral, bacterial, and protozoan pathogens and microbial source tracking markers in paired large- and small-volume water samples Detection of viral, bacterial, and protozoan pathogens and microbial source tracking markers in paired large- and small-volume water samples

When sampling for waterborne microbes, researchers may need to diverge from recommended sample volumes due to logistical constraints, novel targets, or challenging matrices, with little guidance about the potential impact on results. In field studies, we measured bacteria, viruses, and protozoa (15 quantitative polymerase chain reaction assays) in paired large- and small-volume samples...
Authors
Joe Heffron, Joel P. Stokdyk, Aaron D. Firnstahl, Rachel M. Cook, Claire E. Hruby, Mark A. Borchardt

Sources and risk factors for nitrate, pathogens, and fecal contamination of private wells in rural southwestern Wisconsin, USA Sources and risk factors for nitrate, pathogens, and fecal contamination of private wells in rural southwestern Wisconsin, USA

Household well water can be degraded by contaminants from the land's surface, but private well owners lack means to protect the source water from neighboring disturbances. Rural residents of southwestern Wisconsin, USA, rely on private well water, and the combination of land use and fractured carbonate bedrock makes groundwater vulnerable to contamination. To identify the extent, sources...
Authors
Joel P. Stokdyk, Aaron D. Firnstahl, Kenneth Bradbury, Maureen A. Muldoon, Burney Kieke Jr., Mark A. Borchardt

Laboratory assessment for recovery of porcine circovirus 2 and porcine reproductive and respiratory syndrome virus using two types of commercially available hollow-fiber ultrafilters Laboratory assessment for recovery of porcine circovirus 2 and porcine reproductive and respiratory syndrome virus using two types of commercially available hollow-fiber ultrafilters

Groundwater near swine farms is an uninvestigated reservoir for porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circoviruses (PCVs). Enteric microorganisms are often collected from groundwater via dead-end ultrafiltration, but recovery of PRRSV and PCV with this method has not been assessed. We recovered PRRSV2 and PCV2 by dead-end ultrafiltration followed by...
Authors
Aaron D. Firnstahl, Gabi Doughan, Sarah Opelt, Rachel M. Cook, Joseph Heffron, Karen Krueger, Mark A. Borchardt, Locke Karriker, Joel P. Stokdyk, Tucker R. Burch

Quantitative microbial risk assessment with microbial source tracking for mixed fecal sources contaminating recreational river waters, Iowa, USA Quantitative microbial risk assessment with microbial source tracking for mixed fecal sources contaminating recreational river waters, Iowa, USA

Fecal contamination of surface water can cause acute gastrointestinal illness (AGI) among recreators. AGI risk varies among human, livestock, and wildlife fecal sources, but the prevalence of individual sources is unknown for most recreational sites. We estimated AGI risk for six sites near Des Moines, Iowa, using quantitative microbial risk assessment combined with microbial source...
Authors
Tucker R. Burch, Joel P. Stokdyk, Aaron D. Firnstahl, Sarah Opelt, Rachel M. Cook, Joe Heffron, Amanda Brown, Claire E. Hruby, Mark A. Borchardt

Two risk assessments: Evaluating the use of indicator HF183 Bacteroides versus pathogen measurements for modelling recreational illness risks in an urban watershed Two risk assessments: Evaluating the use of indicator HF183 Bacteroides versus pathogen measurements for modelling recreational illness risks in an urban watershed

The purpose of this study was to evaluate the performance of HF183 Bacteroides for estimating pathogen exposures during recreational water activities. We compared the use of Bacteroides-based exposure assessment to exposure assessment that relied on pathogen measurements. We considered two types of recreational water sites: those impacted by combined sewer overflows (CSOs) and those not...
Authors
K Skiendzielewski, Tucker R. Burch, Joel P. Stokdyk, Shannon McGinnis, S McLoughlin, Aaron D. Firnstahl, Sandy Spencer, Mark A. Borchardt, Heather Murphy

A multi-marker assessment of sewage contamination in streams using human-associated indicator bacteria, human-specific viruses, and pharmaceuticals A multi-marker assessment of sewage contamination in streams using human-associated indicator bacteria, human-specific viruses, and pharmaceuticals

Human sewage contaminates waterways, delivering excess nutrients, pathogens, chemicals, and other toxic contaminants. Contaminants and various sewage indicators are measured to monitor and assess water quality, but these analytes vary in their representation of sewage contamination and the inferences about water quality they support. We measured the occurrence and concentration of...
Authors
Peter L. Lenaker, Matthew A. Pronschinske, Steven R. Corsi, Joel P. Stokdyk, Hayley Olds, Deborah K. Dila, Sandra L. McLellan

Quantitative microbial risk assessment for ingestion of antibiotic resistance genes from private wells contaminated by human and livestock fecal sources Quantitative microbial risk assessment for ingestion of antibiotic resistance genes from private wells contaminated by human and livestock fecal sources

We used quantitative microbial risk assessment to estimate ingestion risk for intI1, erm(B), sul1, tet(A), tet(W), and tet(X) in private wells contaminated by human and/or livestock feces. Genes were quantified with five human-specific and six bovine-specific microbial source-tracking (MST) markers in 138 well-water samples from a rural Wisconsin county. Daily ingestion risk (probability...
Authors
Tucker R. Burch, Joel P. Stokdyk, Lisa Durso, Mark A. Borchardt

Study design and methods of the Wells and Enteric disease Transmission (WET) Trial, a randomised controlled trial Study design and methods of the Wells and Enteric disease Transmission (WET) Trial, a randomised controlled trial

Introduction: The burden of disease attributed to drinking water from private wells is not well characterised. The Wells and Enteric disease Transmission trial is the first randomised controlled trial to estimate the burden of disease that can be attributed to the consumption of untreated private well water. To estimate the attributable incidence of gastrointestinal illness (GI)...
Authors
Debbie Lee, Donna Denno, Phil Tarr, Jingwei Wu, Joel P. Stokdyk, Mark A. Borchardt, Heather Murphy

Creek and quarry water quality at Pipestone National Monument and pilot study of pathogen detection methods in waterfall mist at Winnewissa Falls, Pipestone, Minnesota, 2018–19 Creek and quarry water quality at Pipestone National Monument and pilot study of pathogen detection methods in waterfall mist at Winnewissa Falls, Pipestone, Minnesota, 2018–19

Pipestone National Monument is a 301-acre site sacred to many Native American Tribes, providing cultural exhibits and walking trails to Pipestone Creek, Winnewissa Falls, and historical pipestone quarries for numerous visitors each year. However, the Minnesota Pollution Control Agency has determined turbidity and fecal coliform bacteria occur in Pipestone Creek in high enough numbers to...
Authors
Aliesha L. Krall, Kerensa A. King, Victoria G. Christensen, Joel P. Stokdyk, Barbara C. Scudder Eikenberry, S. A. Stevenson

Microbial source tracking and land use associations for antibiotic resistance genes in private wells influenced by human and livestock fecal sources Microbial source tracking and land use associations for antibiotic resistance genes in private wells influenced by human and livestock fecal sources

Antimicrobial resistance is a growing public health problem that requires an integrated approach among human, agricultural, and environmental sectors. However, few studies address all three components simultaneously. We investigated the occurrence of five antibiotic resistance genes (ARGs) and the class 1 integron gene (intI1) in private wells drawing water from a vulnerable aquifer...
Authors
Tucker R. Burch, Joel P. Stokdyk, Aaron D. Firnstahl, Burney Kieke Jr., Rachel M. Cook, Sarah Opelt, Sue Spencer, Lisa Durso, Mark A. Borchardt

Assessing private well contamination in Grant, Iowa, and Lafayette Counties, Wisconsin: The southwest Wisconsin groundwater and geology study Assessing private well contamination in Grant, Iowa, and Lafayette Counties, Wisconsin: The southwest Wisconsin groundwater and geology study

Rural residents of Grant, Iowa, and Lafayette Counties in Wisconsin rely on private wells for their water. Contaminants like nitrate and bacteria from septic systems, fertilizer, and manure can contaminate the groundwater that residents use. Groundwater is vulnerable to contamination where the soil layer is thin and the bedrock is fractured, which is the case for much of the study region...
Authors
Joel P. Stokdyk, Mark A. Borchardt, Aaron D. Firnstahl, Ken Bradbury, Moe Muldoon, Burney A Kieke
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