Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42712
Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA
Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has...
Authors
Deborah D. Iwanowicz, William B. Schill, Deanna H. Olson, M. J. Adams, Christine L. Densmore, Robert S. Cornman, Cynthia R. Adams, Chester Figiel, Chauncey W. Anderson, Andrew R Blaustein, Tara Chestnut
Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012 Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012
Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have been documented for many CECs in laboratory studies, we do not...
Authors
Steven J. Choy, Mandy L. Annis, JoAnn Banda, Sarah R. Bowman, Mark E. Brigham, Sarah M. Elliott, Daniel J. Gefell, Mark D. Jankowski, Zachary G. Jorgenson, Kathy Lee, Jeremy N. Moore, William A. Tucker
Geochemistry and hydrology of perched groundwater springs: assessing elevated uranium concentrations at Pigeon Spring relative to nearby Pigeon Mine, Arizona (USA) Geochemistry and hydrology of perched groundwater springs: assessing elevated uranium concentrations at Pigeon Spring relative to nearby Pigeon Mine, Arizona (USA)
The processes that affect water chemistry as the water flows from recharge areas through breccia-pipe uranium deposits in the Grand Canyon region of the southwestern United States are not well understood. Pigeon Spring had elevated uranium in 1982 (44 μg/L), compared to other perched springs (2.7–18 μg/L), prior to mining operations at the nearby Pigeon Mine. Perched groundwater springs...
Authors
Kimberly R. Beisner, Nicholas V. Paretti, Fred D. Tillman, David L. Naftz, Donald J. Bills, Katherine Walton-Day, Tanya J. Gallegos
Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics
Unconventional oil and gas (UOG) production produces large quantities of wastewater with complex geochemistry and largely uncharacterized impacts on surface waters. In this study, we assessed shifts in microbial community structure and function in sediments and waters upstream and downstream from a UOG wastewater disposal facility. To do this, quantitative PCR for 16S rRNA and antibiotic
Authors
N.L. Fahrenfeld, Hannah Delos Reyes, Alessia Eramo, Denise M. Akob, Adam Mumford, Isabelle M. Cozzarelli
Nonnative trout invasions combined with climate change threaten persistence of isolated cutthroat trout populations in the southern Rocky Mountains Nonnative trout invasions combined with climate change threaten persistence of isolated cutthroat trout populations in the southern Rocky Mountains
Effective conservation of Cutthroat Trout Oncorhynchus clarkii lineages native to the Rocky Mountains will require estimating effects of multiple stressors and directing management toward the most important ones. Recent analyses have focused on the direct and indirect effects of a changing climate on contemporary ranges, which are much reduced from historic ranges owing to past habitat...
Authors
James Roberts, Kurt D. Fausch, Mevin Hooten, Douglas P. Peterson
Grand challenges in the management and conservation of North American inland fishes and fisheries Grand challenges in the management and conservation of North American inland fishes and fisheries
Even with long-standing management and extensive science support, North American inland fish and fisheries still face many conservation and management challenges. We used a grand challenges approach to identify critical roadblocks that if removed would help solve important problems in the management and long-term conservation of North American inland fish and fisheries. We identified...
Authors
Abigail Lynch, Steven J. Cooke, Beard, Yu-Chun Kao, Kai Lorenzen, Andrew M. Song, Micheal S. Allen, Zeenatul Basher, David B. Bunnell, Edward V. Camp, Ian G. Cowx, Jonathan A. Freedman, Vivian M. Nguyen, Joel K. Nohner, Mark W. Rogers, Zachary A. Siders, William W. Taylor, So-Jung Youn
Ecology and space: A case study in mapping harmful invasive species Ecology and space: A case study in mapping harmful invasive species
The establishment and invasion of non-native plant species have the ability to alter the composition of native species and functioning of ecological systems with financial costs resulting from mitigation and loss of ecological services. Spatially documenting invasions has applications for management and theory, but the utility of maps is challenged by availability and uncertainty of data...
Authors
David T. Barnett, Catherine S. Jarnevich, Geneva W. Chong, Thomas J. Stohlgren, Sunil Kumar, Tracy R. Holcombe
Baseline aquatic contamination and endocrine status in a resident fish of Biscayne National Park Baseline aquatic contamination and endocrine status in a resident fish of Biscayne National Park
Surface water, sediment, and fish from Biscayne Bay, coastal wetlands adjacent to the Bay, and canals discharging into the Bay were sampled for determination of baseline contamination in Biscayne National Park. While the number of contaminants detected in canal waters was greater during the wet season than the dry season, no seasonal difference was evident for Biscayne Bay or coastal...
Authors
Timothy A. Bargar, Kevin R.T. Whelan, David Alvarez, Kathy R. Echols, Paul H. Peterman
A serosurvey of diseases of free-ranging gray wolves (Canis lupus) in Minnesota A serosurvey of diseases of free-ranging gray wolves (Canis lupus) in Minnesota
We tested serum samples from 387 free-ranging wolves (Canis lupus) from 2007 to 2013 for exposure to eight canid pathogens to establish baseline data on disease prevalence and spatial distribution in Minnesota's wolf population. We found high exposure to canine adenoviruses 1 and 2 (88% adults, 45% pups), canine parvovirus (82% adults, 24% pups), and Lyme disease (76% adults, 39% pups)...
Authors
Michelle Carstensen, John H. Giudice, Erik C. Hildebrand, J. P. Dubey, John Erb, Dan Stark, John Hart, Shannon M. Barber-Meyer, L. David Mech, Steve K. Windels, Andrew J. Edwards
Early action to address an emerging wildlife disease Early action to address an emerging wildlife disease
A deadly fungal pathogen, Batrachochytrium salamandrivorans (Bsal) that affects amphibian skin was discovered during a die-off of European fire salamanders (Salamandra salamandra) in 2014. This pathogen has the potential to worsen already severe worldwide amphibian declines. Bsal is a close relative to another fungal disease known as Batrachochytrium dendrobatidis (Bd). Many scientists...
Authors
M. J. Adams, M. Camille Harris, Daniel A. Grear
A life cycle database for parasitic acanthocephalans, cestodes, and nematodes A life cycle database for parasitic acanthocephalans, cestodes, and nematodes
Parasitologists have worked out many complex life cycles over the last ~150 years, yet there have been few efforts to synthesize this information to facilitate comparisons among taxa. Most existing host-parasite databases focus on particular host taxa, do not distinguish final from intermediate hosts, and lack parasite life-history information. We summarized the known life cycles of...
Authors
Daniel P. Benesh, Kevin D. Lafferty, Armand Kuris
Electrical guidance efficiency of downstream-migrating juvenile Sea Lamprey decreases with increasing water velocity Electrical guidance efficiency of downstream-migrating juvenile Sea Lamprey decreases with increasing water velocity
We tested the efficacy of a vertically oriented field of pulsed direct current (VEPDC) created by an array of vertical electrodes for guiding downstream-moving juvenile Sea Lampreys Petromyzon marinus to a bypass channel in an artificial flume at water velocities of 10–50 cm/s. Sea Lampreys were more likely to be captured in the bypass channel than in other sections of the flume...
Authors
Scott M. Miehls, Nicholas S. Johnson, Alexander Haro