Data

Understanding how species are distributed in both space and time is a central question in ecology. Seemingly simple questions such as “How many individuals live in a particular patch?”, “Is a patch occupied by a target species?”, “How many species are there?”, and “what factors shape these pattern?” are questions routinely asked by ecologists. The tutorials in occupancyTuts will...

The grizzly bear distribution boundary represents the estimated geographic extent of occupied range of the Yellowstone grizzly bear population for the period 2008-2022. The distribution boundary was delineated to provide reliable estimations of grizzly bear occupancy throughout time and for use as a monitoring tool in grizzly bear management and conservation.The boundary was delineated...

These raw survey data and associated explanatory covariates were used to model western bumble bee occupancy across the western conterminous United States from 1998 to 2020. These data underlie the analyses found in the publication of “Recent and future declines of a historically widespread pollinator linked to climate, land cover, and pesticides” by Janousek et al. 2023 in the...

Honey bees (Apis mellifera), a critical agricultural pollinator in many areas, have a high rate of infection with a large DNA virus, Apis mellifera filamentous virus (AmFV), yet little is known about its ecology or impact on honey bee colonies, other than its ubiquity and apparent low virulence. This study scanned over 5,000 public data sets to detect AmFV sequences in honey bees as well...

Bottom-landing and floating platforms with instrumentation to measure currents, waves, water level, optical turbidity, water temperature, and conductivity were deployed at four locations in Bellingham Bay, Washington, USA. Platforms were deployed during three separate periods: July 30, 2019-November 14, 2019; November 19, 2019-February 5, 2020; and January 22, 2021-April 13, 2021...

Cold-water corals create complex structures, but our incomplete knowledge of their niche space limits our ability to understand their distribution and therefore the impact of the ecosystem services they provide in the ocean. The Richardson reef complex consists of over 150 km of linear reef tracts within an area of 75 km2 between 700-900 m depth. This reef experiences rapid shifts in...

This data release contains oil well annular cement and casing damage data from parts of the South Belridge and Lost Hills Oil Fields in western Kern County, California. The study area coincides with where groundwater with less than 10,000 milligrams per liter total dissolved solids and outside an exempt aquifer are located overlying oil-producing zones in these fields. In the study areas

OpenFOAM Computational Fluid Dynamics (CFD) models were developed to simulate wave energy dissipation across natural rough reef surfaces on the reef flat off Waiakane, Molokai, Hawaii, to understand this process in the context of reef restoration design. A total of 140 models were developed (70 per low- and 70 per high-bed-relief domains). Models were calibrated and validated with...

This code solves optimal harvest policies under different scenarios of system change, represented as changes in demographic parameters over time. This document contains code to solve policies using backwards iteration stochastic dynamic programming, project populations forward to simulate the policies, and generate figures.

Amphibians are among the most sensitive taxa to climate change, and species inhabiting arid and semiarid landscapes at the extremes of their range are especially vulnerable to periods of drought. The Jack Creek, Oregon, USA population of Oregon spotted frogs (Rana pretiosa) faces unique challenges occupying the highest elevation site in the species’ extant range and one that has been

This data release includes organic and metals data for biologic samples collected from two studies conducted in the Niagara River Area of Concern (AOC) and the Buffalo River AOC during 2020. The first, Niagara River Forage Fish study assessed contaminant data from 26 fish-tissue samples collected at four locations in or near the Niagara River AOC during 2020, and from two reference...

The Marcellus Shale Energy and Environmental Laboratory (MSEEL) field site in Morgantown, WV was established by West Virginia University in order to increase understanding of factors that affect resource recovery and environmental impacts from unconventional oil and gas development. The site, which is located in the Morgantown Industrial Park (MIP) adjacent to the Monongahela River...