Software

This release adds functionality for building debris-flow likelihood lookup tables, and uploading the results to the National Weather Service (NWS) FTP endpoint. The release: * Adds the `authenticate nws` command, which collects authentication credentials for uploading to the NWS FTP endpoint * Updates the `run` command to compute debris-flow likelihood lookup tables, and save the results...

The Operational Aftershock Forecasting server runs continuously in the cloud, monitoring the USGS ComCat earthquake catalog. It automatically generates aftershock forecasts and publishes them on the earthquake event pages. The analyst utilities are GUI programs that are used by analysts to evaluate the operation of the OAF servers, and make adjustments to the statistical model used by...

**OptimTFE** is a spatial decision-support tool designed to help conservation practitioners identify priority recovery areas for species/taxonomic groups based on known location data, habitat suitability values, and other relevant data inputs. The optimTFE tool was developed to improve transparency, flexibility, and expert engagement throughout the spatial conservation prioritization...

This software release contains the code necessary to reconstruct analyses, tables, and figures presented in "Pan-Amphibia distribution of the fungal parasite Batrachochytrium dendrobatidis varies with species and temperature." These analyses compile temperature and precipitation data with Bd data for a cross-sectional amphibian swabbing survey performed 2014-2017, perform spatial data...

This release adds the `data` package, which provides routines to download commonly used datasets from the internet. The release also provides pfdf tutorials as Jupyter Notebooks, improves array broadcasting in the `gartner2014` and `staley2017` modules, and introduces the `RasterMetadata` class (which manages raster metadata without loading data arrays to memory). Documentation: https:/...

PHAST Is a computer program for simulating groundwater flow, solute transport, and multicomponent geochemical reactions.

PHREEQC Version 3 is a computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations.

The affiliated manuscript examines adult survival and breeding dispersal for piping plovers at two spatial scales and examines covariates that influence them. This product includes the R and JAGS model code to run the models in the manuscript with the data from the affiliated data release.

The Precipitation-Runoff Modeling System is a deterministic, distributed-parameter, physical process based modeling system developed to evaluate the response of various combinations of climate and land use on streamflow and general watershed hydrology.

This software contains two separate R Markdown files that comprise an analysis to: 1.) Build and test MaxEnt models predicting the distribution of twelve species of native freshwater mussels in the Six North-Eastern most U.S. states. We generate models with beta multipliers 1-15 and identify optimal models using the dismo package, maxent.jar, and ENMeval. 2.) Using the species...

This is a permanent record of all current and former versions of the PWFDF data specification. The spec describes: the organization of assessments on ScienceBase, ScienceBase metadata unique to the collection, and the files, data, and metadata contained within individual assessments.

This release introduces the pwfdf-api package. The package provides Python and command-line interfaces to search, query, and download hazard assessments from the PWFDF collection. This initial release introduces the four main commands: assessments: List PWFDF assessments that match search criteria browse: Open PWFDF search results in a web browser download: Download PWFDF assessments to...