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A new digital archive released by the USGS Pacific and St. Petersburg Coastal and Marine Science Centers gives scientists an unprecedented look inside reef-building corals, layer by layer, using advanced imaging technology. 

The USGS Rotating X-ray Computed Tomography Coral-Core Archive comprises three-dimensional scans of roughly 360 coral reef cores collected around the world over the past five decades. The dataset, now publicly available, transforms these physical samples into calibrated digital models that researchers can analyze from anywhere.

Together, the cores provide a detailed record of coral growth, environmental change, and reef health spanning decades to centuries.  

A 3D View Inside Coral Skeletons

Coral cores are cylindrical samples drilled vertically from massive reef-building corals. Much like tree rings, the skeletons of these corals contain annual growth bands that record environmental conditions over time.

Using rotating X-ray computed tomography (RXCT), researchers created high-resolution 3D image volumes that reveal the internal structure of each core. From these scans, scientists can measure key indicators of coral health, including: 

  • Skeletal density 

  • Linear growth (extension) 

  • Calcification rates 

 

Media
Animation of a computed tomography scan of a coral core
Animation of a computed tomography scan of a coral core. Computerized tomography (CT), commonly used in the medical world to acquire x-ray scans for diagnostic purposes, is now considered to be a valuable tool when determining yearly growth rates and the density of corals which can in turn be used to determine the calcification, or constructive process responsible for reef growth. 


Because the scans are calibrated and standardized, scientists can reproduce these measurements consistently across the entire dataset. By preserving the samples digitally, this unique dataset allows scientists to study coral growth histories without repeatedly sub-sampling the physical cores. 

Researchers can analyze how reef-building corals responded to environmental changes over time, including: 

  • Ocean warming 

  • Water chemistry shifts 

  • Storm impacts 

  • Local environmental stressors 


These long-term records can help scientists understand how coral reefs have changed in the past and how they might respond to future climate conditions. 

Rotating x-ray computed tomography scanner with coral core

Supporting Reef Conservation and Coastal Protection 

Beyond ecological research, the archive may help inform coral reef restoration and coastal resilience efforts. 

Coral reefs are often described as natural infrastructure because they perform essential protective functions for coastlines: reef structures can reduce coastal flood risk by absorbing and dissipating wave energy before it reaches shore.

By establishing historical baselines for coral growth and reef structure, the archive helps scientists and coastal managers better evaluate: 

  • Reef degradation trends 

  • Restoration targets 

  • Changes in reef-building capacity 


These insights can also improve models that assess how reef condition influences coastal hazards. 

 

A Resource for the Global Research Community 

With the release of the RXCT Coral-Core Archive, the USGS is making decades of coral research accessible to scientists, conservation planners and coastal managers worldwide.

As coral reefs face increasing pressures globally, the ability to examine detailed records of their past growth and decline may prove critical for guiding future conservation and coastal adaptation strategies. 

USGS and NPS scientists collecting a coral core within the National Park of American Samoa on Ofu
USGS and NPS scientists collecting a coral core within the National Park of American Samoa on Ofu
Image: Coral Core Recovery
Coral Core Recovery
Aboard the Hawaiian Drowned Reefs Expedition, Nancy Prouty examines a coral core
Aboard the Hawaiian Drowned Reefs Expedition, Nancy Prouty examines a coral core
Coral core sample in aluminum tube for scanning
Coral core sample in aluminum tube for scanning
Two oceanographers look at a coral core stored in a wooden box
Coral cores like this one reveal geologic history of Keys reefs
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