Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5022
Bias correction of bounded location errors in presence-only data Bias correction of bounded location errors in presence-only data
Location error occurs when the true location is different than the reported location. Because habitat characteristics at the true location may be different than those at the reported location, ignoring location error may lead to unreliable inference concerning species–habitat relationships.We explain how a transformation known in the spatial statistics literature as a change of support...
Authors
Trevor J. Hefley, Brian M. Brost, Mevin Hooten
Thermal adaptation and phenotypic plasticity in a warming world: Insights from common garden experiments on Alaskan sockeye salmon Thermal adaptation and phenotypic plasticity in a warming world: Insights from common garden experiments on Alaskan sockeye salmon
An important unresolved question is how populations of coldwater-dependent fishes will respond to rapidly warming water temperatures. For example, the culturally and economically important group, Pacific salmon (Oncorhynchus spp.), experience site-specific thermal regimes during early development that could be disrupted by warming. To test for thermal local adaptation and heritable...
Authors
Morgan M. Sparks, Peter A. H. Westley, Jeffrey A. Falke, Thomas P. Quinn
Windows of susceptibility and consequences of early life exposures to 17β–estradiol on medaka (Oryzias latipes) reproductive success Windows of susceptibility and consequences of early life exposures to 17β–estradiol on medaka (Oryzias latipes) reproductive success
Estrogens and estrogen mimics are commonly found in surface waters and are associated with deleterious effects in fish populations. Impaired fertility and fecundity in fish following chronic exposures to estrogens and estrogen mimics during critical windows in development are well documented. However, information regarding differential reproductive effects of exposure within defined...
Authors
Crystal S. D. Lee Pow, Kedamawit Tilahun, Kari Creech, J. Mac Law, W. Gregory Cope, Thomas J. Kwak, James A. Rice, D. Derek Aday, Seth W. Kullman
Conservation status of an imperiled crayfish, Faxonius marchandi Hobbs, 1948 (Decapoda: Cambaridae) Conservation status of an imperiled crayfish, Faxonius marchandi Hobbs, 1948 (Decapoda: Cambaridae)
We summarize the distribution, ecology, threats, and conservation status of Faxonius marchandi (Hobbs, 1948), the Mammoth Spring crayfish, a limited-range endemic species to the Spring River drainage of Missouri and Arkansas, USA. The species is known from 51 locations on lower-order perennial and intermittent streams in only the eastern portion of the drainage. Faxonius marchandi is...
Authors
Robert J. DiStefano, Daniel D. Magoulick, C.A. Flinders, Emily M. Imhoff
Efficacy of time-lapse photography and repeated counts abundance estimation for white-tailed deer populations Efficacy of time-lapse photography and repeated counts abundance estimation for white-tailed deer populations
Automated cameras have become increasingly common for monitoring wildlife populations and estimating abundance. Most analytical methods, however, fail to account for incomplete and variable detection probabilities, which biases abundance estimates. Methods which do account for detection have not been thoroughly tested, and those that have been tested were compared to other methods of...
Authors
Allison Keever, Conor P. McGowan, Stephen S. Ditchkoff, S.A. Acker, J. Barry Grand, Chad H. Newbolt
Evidence for density dependence in foraging and migratory behavior of a subtropical nearshore seabird Evidence for density dependence in foraging and migratory behavior of a subtropical nearshore seabird
Density-dependent competition for food resources influences both foraging ecology and reproduction in a variety of animals. The relationship between colony size, local prey depletion, and reproductive output in colonial central-place foragers has been extensively studied in seabirds; however, most studies have focused on effects of intraspecific competition during the breeding season...
Authors
Juliet S. Lamb, Yvan G. Satge, Patrick G.R. Jodice
Fish Bioenergetics 4.0: An R-based modeling application Fish Bioenergetics 4.0: An R-based modeling application
Bioenergetics modeling is a widely used tool in fisheries management and research. Although popular, currently available software (i.e., Fish Bioenergetics 3.0) has not been updated in over 20 years and is incompatible with newer operating systems (i.e., 64‐bit). Moreover, since the release of Fish Bioenergetics 3.0 in 1997, the number of published bioenergetics models has increased...
Authors
David Deslauriers, Steven R. Chipps, James E. Breck, James A. Rice, Charles P. Madenjian
Estimating occupancy and abundance using aerial images with imperfect detection Estimating occupancy and abundance using aerial images with imperfect detection
Species distribution and abundance are critical population characteristics for efficient management, conservation, and ecological insight. Point process models are a powerful tool for modelling distribution and abundance, and can incorporate many data types, including count data, presence-absence data, and presence-only data. Aerial photographic images are a natural tool for collecting...
Authors
Perry J. Williams, Mevin Hooten, Jamie N. Womble, Michael R. Bower
Diet composition and provisioning rates of nestlings determine reproductive success in a subtropical seabird Diet composition and provisioning rates of nestlings determine reproductive success in a subtropical seabird
Understanding how both quality and quantity of prey affect the population dynamics of marine predators is a crucial step toward predicting the effects of environmental perturbations on population-level processes. The Junk Food Hypothesis, which posits that energetic content of prey species may influence reproductive capacity of marine top predators regardless of prey availability, has...
Authors
Juliet S. Lamb, Patrick G.R. Jodice, Yvan G. Satge
Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes
Amphidromous fishes are major components of oceanic tropical island stream ecosystems, such as those of the Caribbean island, Puerto Rico. Fishes with this life history face threats related to the requirement for connectivity between freshwater and marine environments during early life stages. Pelagic larval duration and recruitment phenology are 2 early life-history processes that are...
Authors
Augustin C. Engman, Thomas J. Kwak, Jesse R. Fischer
Integrating the effects of salinity on the physiology of the eastern oyster, Crassostrea virginica, in the northern Gulf of Mexico through a Dynamic Energy Budget model Integrating the effects of salinity on the physiology of the eastern oyster, Crassostrea virginica, in the northern Gulf of Mexico through a Dynamic Energy Budget model
We present a Dynamic Energy Budget (DEB) model for the eastern oyster, Crassostrea virginica, which enables the inclusion of salinity as a third environmental variable, on top of the standard foodr and temperature variables. Salinity changes have various effects on the physiology of oysters, potentially altering filtration and respiration rates, and ultimately impacting growth...
Authors
Romain Lavaud, Megan K. LaPeyre, Sandra M. Casas, C. Bacher, Jerome F. La Peyre
Responses of terrestrial herpetofauna to persistent, novel ecosystems resulting from mountaintop removal mining Responses of terrestrial herpetofauna to persistent, novel ecosystems resulting from mountaintop removal mining
Mountaintop removal mining is a large-scale surface mining technique that removes entire floral and faunal communities, along with soil horizons located above coal seams. In West Virginia, the majority of this mining occurs on forested mountaintops. However, after mining ceases the land is typically reclaimed to grasslands and shrublands, resulting in novel ecosystems. In this study, we...
Authors
Jennifer M. Williams, Donald J. Brown, Petra B. Wood