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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5185

Learning complex spatial dynamics of wildlife diseases with machine learning-guided partial differential equations Learning complex spatial dynamics of wildlife diseases with machine learning-guided partial differential equations

Emerging wildlife pathogens often display geographic variability due to landscape heterogeneity. Modeling approaches capable of learning complex, non-linear spatial dynamics of diseases are needed to rigorously assess and mitigate the effects of pathogens on wildlife health and biodiversity. We propose a novel machine learning (ML)-guided approach that leverages prior physical knowledge...
Authors
Juan Francisco Mandujano Reyes, Gina Oh, Ian McGahan, Ting Fung Ma, Robin Russell, Daniel P. Walsh, Jun Zhu

Leveraging detection uncertainty to estimate Renibacterium salmoninarum infection status among multiple tissues and assays Leveraging detection uncertainty to estimate Renibacterium salmoninarum infection status among multiple tissues and assays

Effective disease surveillance relies on accurate pathogen testing and robust prevalence estimates. Diagnostic specificity (DSp), the probability that an uninfected animal tests negative, is high when false positives are low. Diagnostic sensitivity (DSe) is the probability an infected animal tests positive; higher DSe means fewer false negatives. However, sensitivity and false negatives...
Authors
Tawni B.R. Firestone, Eric R. Fetherman, Kathryn P. Huyvaert, John D. Drennan, Rebecca E. Brock, Brooke Yeatts, Dana L. Winkelman

Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California. Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California.

Introduction: The Sacramento-San Joaquin River system (SSJ) of California includes both riverine, delta, and estuarine habitats and is among the most modified aquatic ecosystems in the United States. Water development projects in the system are associated with declines of many native species, including White Sturgeon Acipenser transmontanus. Methods: We used White Sturgeon pectoral fin...
Authors
Michael C. Quist, Shannon Blackburn, Marta Ulaski, Zachary Jackson

Modeling lamprey distribution using flow, geomorphology, and elevation in a terminal lake system Modeling lamprey distribution using flow, geomorphology, and elevation in a terminal lake system

Objective Lampreys are an ecologically important group of fishes. Several species are imperiled and lack key distribution and habitat data. The terminal Goose Lake Basin, U.S.A. is home to two such species, the Goose Lake Lamprey, Entosphenus sp. (formally undescribed), and the Pit-Klamath Brook Lamprey, E. lethophagus. Species distribution models (SDMs) are useful for identifying key...
Authors
Jacob C. Dickey, Benjamin J. Clemens, Michael Dumelle, Melanie J. Davis

Stable occupancy of conservation-priority birds amid community shifts across 16 years on Iowa wetland easements Stable occupancy of conservation-priority birds amid community shifts across 16 years on Iowa wetland easements

Intensive agriculture in the Prairie Pothole Region of Iowa, USA has resulted in significant wetland drainage and wildlife population declines. However, easement programs are increasingly used to protect and restore wetlands and revitalize biodiversity. Short-term responses (i.e., 1–5 years) of birds to wetland restorations are well-documented, but long-term trends are less understood...
Authors
Lindsey A.W. Gapinski, Karen E. Kinkead, Adam K. Janke, Stephen J. Dinsmore, Todd Bishop, Anna Maureen Tucker

Reproductive characteristics and spawning potential ratio modeling of a vulnerable riverine specialist in the lower unchannelized Missouri River, USA Reproductive characteristics and spawning potential ratio modeling of a vulnerable riverine specialist in the lower unchannelized Missouri River, USA

Reproductive characteristics for populations of imperiled, non-game species are not regularly studied but may be important for identifying factors associated with their population sustainability. Understanding reproductive traits of vulnerable species, particularly long-lived species, may provide insight for implementing management actions to respond to potential overharvest. This study...
Authors
Lindsey A.P. LaBrie, Tanner L. Carlson, Jeff S. Wesner, Chelsey A. Pasbrig, Steven R. Chipps, Benjamin J. Schall

Maintaining frog monitoring and population on the Las Cienegas National Conservation Area Maintaining frog monitoring and population on the Las Cienegas National Conservation Area

This report summarizes and analyzes the data collected on the Chiricahua Leopard Frog (CLF) populations on the Las Ciénegas National Conservation Area (LCNCA) in southeast Arizona, U.S.A., during the reporting period covered under this funding agreement from September 2020 through October 2024 and place this analysis in historical context of the previous monitoring efforts. The major...
Authors
Javan Mathias Bauder, Chris L. Prewitt, David Hall

The socio-ecological niche The socio-ecological niche

1. Ecologists recognise that we live on an increasingly human-dominated planet, yet most of the field's foundational concepts remain essentially biophysical, with little reference to human society. 2. There are few better examples of this divide between ecological and social theory than the niche concept. During its century-long history, the niche concept has been defined in many ways...
Authors
Michael C Mcinturff, Peter S. Alagona, Clare E.B. Cannon, David N. Pellow

How sampling design of GPS collar deployment influences consistency of mapped migration corridors over time How sampling design of GPS collar deployment influences consistency of mapped migration corridors over time

Federal and state agencies within the United States have recently issued directives prioritizing the conservation of ungulate migration corridors and winter ranges. The ability to identify and delineate the spatial distribution of seasonal ranges underpins these policies. While such delineations are often derived from global positioning system (GPS) collar data collected for a few years...
Authors
Emily R. Gelzer, Justine A. Becker, Samantha P.H. Dwinnell, Gary L. Fralick, Embere Hall, Rusty C. Kaiser, Matthew J. Kauffman, Tayler N. LaSharr, Kevin L. Monteith, Anna C. Ortega, Jill E. Randall, Hall Sawyer, Mark A. Thonhoff, Jerod A. Merkle

Factors influencing daily nest survival rates of Aleutian terns in the Kodiak Archipelago, Alaska Factors influencing daily nest survival rates of Aleutian terns in the Kodiak Archipelago, Alaska

The Aleutian tern (Onychoprion aleuticus) is a species of high conservation concern in Alaska, USA, owing to large declines at known breeding locations since the 1960s. The small population size and ephemeral behavior of this species have limited the collection of basic biological information and hindered the identification of potential drivers of this decline. Significant unknowns...
Authors
Jill E. Tengeres, Katie M. Dugger, Robin M. Corcoran, Donald E. Lyons

Idiosyncratic spatial scaling of biodiversity–disease relationships Idiosyncratic spatial scaling of biodiversity–disease relationships

High host biodiversity is hypothesized to dilute the risk of vector-borne diseases if many host species are ‘dead ends' that cannot effectively transmit the disease and low-diversity areas tend to be dominated by competent host species. However, many studies on biodiversity–disease relationships characterize host biodiversity at single, local spatial scales, which complicates efforts to...
Authors
Neil A. Gilbert, Graziella Vittoria DiRenzo, Elise Zipkin

On the interface between cultural transmission, phenotypic diversity, demography and the conservation of migratory ungulates On the interface between cultural transmission, phenotypic diversity, demography and the conservation of migratory ungulates

Recent evidence indicates that green-wave surfing behaviour in ungulates and the migrations that stem from this behaviour are socially learned, culturally transmitted across generations and become more efficient via cumulative cultural evolution. But given a lack of corroborative evidence, whether ungulate migration is a cultural phenomenon remains a hypothesis deserving of further...
Authors
Brett R. Jesmer, Janey Fugate, Matthew J. Kauffman
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