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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5294

The American black bear (Ursus americanus) as an apex predator: Investigating the ecological role of the world’s most abundant large carnivore The American black bear (Ursus americanus) as an apex predator: Investigating the ecological role of the world’s most abundant large carnivore

Introduction
Authors
John M. Nettles, Caroline M. Abramowitz, Wesley W. Boone, Stephen N. Harris, Chloe E. Horton, Meghan P. Keating, Dana L. Nelson, Samantha N. Smith, Katelyn N. Steen, Erin K. Buchholtz, David S. Jachowski

Shrinking channels, growing threats: Habitat degradation from channel narrowing and invasive vegetation in three dryland rivers Shrinking channels, growing threats: Habitat degradation from channel narrowing and invasive vegetation in three dryland rivers

Water development and the proliferation of invasive riparian vegetation have led to widespread habitat loss and simplification of rivers in the western United States, contributing to the imperilment of native fishes. Here, we quantify channel narrowing and vegetation encroachment, which are conspicuous indicators of riverine habitat alteration, along ∼400 km of three dryland tributaries...
Authors
Benjamin J. Miller, Mark C. McKinstry, Peter R. Wilcock, William W. Macfarlane, Steven Bassett, Phaedra E. Budy, Casey A. Pennock

A single nucleotide polymorphism panel for identifying North American species and hybrids in the genus Morone A single nucleotide polymorphism panel for identifying North American species and hybrids in the genus Morone

Four species of the fish genus Morone exist in North America and are often the focus of management actions, including propagation and stocking of their hybrids. We have developed an amplicon-based single nucleotide polymorphism (SNP) genotyping panel that provides the ability to distinguish all four species and the commonly stocked M. chrysops x M. saxatilis hybrid using a set of 47 SNPs...
Authors
Jared Homola, Hadley I.A. Boehm, Paul Albosta, Craig Paukert

Evidence for marine-driven, cyclical fluctuations in burrow-nesting seabird habitat on the Oregon Coast Evidence for marine-driven, cyclical fluctuations in burrow-nesting seabird habitat on the Oregon Coast

Seabirds are among the most threatened birds globally, with the loss or deterioration of coastal breeding habitats posing a severe threat. Natural and anthropogenic disturbances substantially influence coastal ecosystems through erosion and vegetation loss, altering habitat for the wildlife species that depend on them. In addition to these disturbances, oceanographic processes may play...
Authors
Carina M. Kusaka, Shawn Stephensen, James T. Peterson, Melanie J. Davis

Food habits of Yellow Perch, Smallmouth Bass, and Northern Pikeminnow in Lake Cascade, Idaho Food habits of Yellow Perch, Smallmouth Bass, and Northern Pikeminnow in Lake Cascade, Idaho

Objective Yellow Perch Perca flavescens was first encountered in Lake Cascade, Idaho, in 1957. Since its introduction, the abundance of Yellow Perch in Lake Cascade has been highly variable. Historically, declines in Yellow Perch abundance were attributed to predation by Northern Pikeminnow Ptychocheilus oregonensis. In the 1990s, Smallmouth Bass Micropterus dolomieu became established...
Authors
Bryce Marciniak, Mike Thomas, Jordan Messner, Matthew P. Corsi, Michael C. Quist

Environmental controls of suppressed fall crop productivity in an agrivoltaic solar array Environmental controls of suppressed fall crop productivity in an agrivoltaic solar array

Globally, agrivoltaics (AV) research has revealed how microclimates created by photovoltaic (PV) panels can be leveraged to promote reciprocal benefits for agricultural land use and PV energy generation. Yet, in regions of the United States where emissions reduction laws are likely to lead to greater PV development on croplands, empirical evaluation of such co-location remain under...
Authors
Matthew A. Sturchio, Dana F. Russell, Jasmine Schmidt, Caroline Marschner, Antonio DiTomasso, Jinwook Kim, Steven Mark Grodsky

Climate and land use drivers of freshwater fish biodiversity in the northeastern United States Climate and land use drivers of freshwater fish biodiversity in the northeastern United States

Freshwater habitats can sustain high biodiversity, but habitat degradation, species invasion, and overexploitation have imperiled freshwater species. The multiple threats to freshwater habitats and changing stream characteristics due to climate change make it challenging to identify the drivers of fish vulnerability, especially given that the importance of drivers may vary by the...
Authors
Jennifer B. Rogers, Graziella Vittoria DiRenzo, Rebecca M. Quiñones, Todd Richards, Allison H. Roy

Valuing recreational fishing using creel survey statistics Valuing recreational fishing using creel survey statistics

Recreation demand analysis has relied on mail and internet surveys to collect information on individual recreators. However, conducting these surveys is costly and time-consuming. Alternative sources that report aggregate visitation may go unused due to a lack of information about trip starting points. We set up and solve a system of equations that predict reservoir visits and the home...
Authors
Luke Boehm, Richard T. Melstrom, Kevin L. Pope

Sinoatrial contracaeciasis in Johnny Darters (Etheostoma nigrum) and Plains Topminnow (Fundulus sciadicus) from the South Platte drainage, Colorado Sinoatrial contracaeciasis in Johnny Darters (Etheostoma nigrum) and Plains Topminnow (Fundulus sciadicus) from the South Platte drainage, Colorado

Intra-sinoatrial nematodes were incidentally recognized in wild-caught Colorado Johnny Darters (Etheostoma nigrum, JD) in 2020–2021 and in Colorado Plains Topminnow (Fundulus sciadicus, PTM) in 2023-2024. PTM and JD were evaluated histologically. Nematodes dissected from PTM were used for morphologic evaluation and molecular identification. The first and second internal transcribed...
Authors
Paula Andrea Schaffer, Ashley K. McGrew, Jessica Henley, Catherine M. Adams, Dana L. Winkelman, Ryan M. Fitzpatrick, Pete Cadmus

Bright spots for advancing ecological understanding and conservation decision-making Bright spots for advancing ecological understanding and conservation decision-making

A lot can be learned by studying bright spots—defined as unexpected positive outcomes. In fields like public health, education, and oncology, identifying factors behind bright spots reveals previously unknown drivers of success that can be replicated elsewhere. This concept is being applied in conservation but is hampered by variations in definitions of bright spots and confusion with...
Authors
Holly Susan Embke, Zachary S. Feiner, Gretchen Hansen, Daniel A. Isermann, Olaf P. Jensen, Christopher I. Rounds, Quinn Smith, M. Jake Vander Zanden

Animal trajectory imputation and uncertainty quantification via deep learning Animal trajectory imputation and uncertainty quantification via deep learning

Imputing missing data in animal trajectories is crucial for understanding animal movements during unobserved periods. However, the traditional methods, such as linear interpolation and the continuous-time correlated random walk model, are often inadequate to capture the complexity of animal movements. Here, we develop a deep learning approach to animal trajectory imputation by a...
Authors
Kehui Yao, Ian P. McGahan, Jun Zhu, Daniel J. Storm, Daniel P. Walsh

Inferring Brown-Capped Rosy-Finch demography and breeding distribution trends from long-term wintering data in New Mexico Inferring Brown-Capped Rosy-Finch demography and breeding distribution trends from long-term wintering data in New Mexico

The three North American Rosy-Finch species (Brown-capped [Leucosticte australis], Black [L. atrata], and Gray-crowned [L. tephrocotis]) are among the most climate-threatened species in the United States. New Mexico is an important location for investigating the effects of climate change because it is the southernmost location in which Brown-capped Rosy-Finches breed and the southernmost...
Authors
Whitney A. Watson, Corrie C. Borgman, Steven Cox, Abigail Jean Lawson
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