Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5123
Environmental conditions influencing the abundance of the salmonid ectoparasite Salmincola californiensis across upper Willamette River Reservoirs, Oregon Environmental conditions influencing the abundance of the salmonid ectoparasite Salmincola californiensis across upper Willamette River Reservoirs, Oregon
The freshwater copepod Salmincola californiensis is an ectoparasite of Pacific salmon and trout (Oncorhynchus spp.). High levels of infection by this parasite can significantly damage gills and result in blood loss, affecting the fitness and survival of hosts, and it may hinder recovery efforts of threatened and endangered salmonids. Juvenile salmonids that rear in reservoirs have been...
Authors
Kelsi Antonelli, Christina Amy Murphy, Amanda M.M. Pollock, Ivan Arismendi
Optimizing control of a freshwater invader in time and space Optimizing control of a freshwater invader in time and space
The global spread of invasive species in aquatic ecosystems has prompted population control efforts to mitigate negative impacts on native species and ecosystem functions. Removal programs that optimally allocate removal effort across space and time offer promise for improving invader suppression or eradication, especially given the limited resources available to these programs. However...
Authors
Jessica O. Diallo, Sarah J. Converse, Matthew Chmiel, Andy Stites, Julian D. Olden
Origin stories: How does learned migratory behaviour arise in populations? Origin stories: How does learned migratory behaviour arise in populations?
Although decades of research have deepened our understanding of the proximate triggers and ultimate drivers of migrations for a range of taxa, how populations establish migrations remains a mystery. However, recent studies have begun to illuminate the interplay between genetically inherited and learned migrations, opening the door to the evaluation of how migration may be learned...
Authors
Janey Fugate, Cody F. Wallace, Ellen O. Aikens, Brett Jesmer, Matthew J. Kauffman
Living with uncertainty: Using multi-model large ensembles to assess emperor penguin extinction risk for the IUCN Red List Living with uncertainty: Using multi-model large ensembles to assess emperor penguin extinction risk for the IUCN Red List
Improved methods for identifying species at risk are needed to strengthen climate change vulnerability assessments, as current estimates indicate that up to one million species face extinction due to environmental changes. Integrating multiple sources of uncertainty enhances the robustness of Red List of Threatened Species assessments, providing a more comprehensive understanding of...
Authors
Stephanie Jenouvrier, Alice Eparvier, Bilgecan Sen, Francesco Ventura, Christian Joseph Che-Castaldo, Marika Holland, Laura Landrum, Kristen Krumhardt, Jimmy Garnier, Karine Delord, Christophe Barbraud, Philip Trathan
Looking for Lazarus: Environmental DNA (eDNA) surveillance of the federally threatened Slender Chub (Erimystax cahini) in the Clinch and Powell Rivers Looking for Lazarus: Environmental DNA (eDNA) surveillance of the federally threatened Slender Chub (Erimystax cahini) in the Clinch and Powell Rivers
Erimystax cahni (Slender Chub) is a federally threatened fish native to the Powell, Clinch, and lower Holston rivers of Tennessee and Virginia. No individuals have been captured or reported for over 2 decades. We developed a species-specific environmental DNA (eDNA) assay to survey for its presence throughout its native distribution in new and historical sites. We detected Slender Chub...
Authors
R.T. Paine, Mark W. Rogers, Amanda E. Rosenberger
Simulating demography, monitoring, and management decisions to evaluate adaptive management strategies for endangered species Simulating demography, monitoring, and management decisions to evaluate adaptive management strategies for endangered species
Adaptive management (AM) remains underused in conservation, partly because optimization-based approaches require real-world problems to be substantially simplified. We present an approach to AM based in management strategy evaluation, a method used largely in fisheries. Managers define objectives and nominate alternative adaptive strategies, whose future performance is simulated by...
Authors
Stefano Canessa, Sarah J. Converse, Lynn Adams, Doug P. Armstrong, Troy Makan, Mhairi McCready, Kevin A. Parker, Elizabeth H. Parlato, Hannah A. Sipe, John J. Ewen
Self‐sustaining populations are a conservation vision, not an operational objective Self‐sustaining populations are a conservation vision, not an operational objective
It is common for species conservation plans to identify the establishment or maintenance of a “self-sustaining population” as an objective. However, this statement vaguely conflates different formulations and interpretations of population viability, management costs, and cultural preferences for non-invasive population management. Hidden value judgments and assumptions about these...
Authors
Stefano Canessa, Axel Moehrenschlager, John G. Ewen, Sarah J. Converse
Balancing monitoring and management in the adaptive management of an invasive species Balancing monitoring and management in the adaptive management of an invasive species
Efficient allocation of managers' limited resources is necessary to effectively control invasive species, but determining how to allocate effort between monitoring and management over space and time remains a challenge. In an adaptive management context, monitoring data are key for gaining knowledge and iteratively improving management, but monitoring costs money. Community science or...
Authors
Brielle K. Thompson, Julien Olden, Sarah J. Converse
Points of consensus on catch-and-release: Considerations for science, ethics, and fisheries management Points of consensus on catch-and-release: Considerations for science, ethics, and fisheries management
Catch-and-release (C&R), whether via regulations or voluntary actions, is typically employed with the intent of reducing fishing mortality while maintaining recreational angling opportunities (Isermann & Paukert, 2010), but there has been significant discourse about the relative importance of individual-level (see Cooke et al., 2025) vs. population-level (see Corsi et al., 2025) effects...
Authors
Matthew P. Corsi, Steven J. Cooke, Andy J. Danylchuk, Meaghan Guckian, Joseph Kozfkay, Michael C. Quist
Aggregated space use by soft-released translocated Gopher Tortoises (Gopherus polyphemus) Aggregated space use by soft-released translocated Gopher Tortoises (Gopherus polyphemus)
Translocated herpetofauna can exhibit irregular space use and movement patterns when compared with resident conspecifics. In Florida, USA, Gopher Tortoises (Gopherus polyphemus) are translocated throughout the state to mitigate habitat loss due to development. The postrelease space use of translocated Gopher Tortoises within soft-release pens can affect population dynamics and population
Authors
Max D. Jones, Kevin J. Loope, Vivian H. Porter, Danielle K. Walkup, Wade A. Ryberg, Jeremy R. Preston, Justin T. Johnson, Bruce W. Hagedorn, Robert Bilbow, Billy M. Moore, Brandon C. Bowers, Roel R. Lopez, Elizabeth Ann Hunter
Estuarine tidal cycles may preserve thermal refugia as global temperatures increase Estuarine tidal cycles may preserve thermal refugia as global temperatures increase
Climate change is affecting coastal ecosystems worldwide as water temperatures increase, hydrologic regimes change, and sea levels rise. Consequently, estuaries risk declines in ecosystem functioning due to increasing temperatures and other hydrologic factors. Characterizing and predicting estuarine water temperature are challenging because these systems are highly dynamic. Statistical...
Authors
Melanie J. Davis, Isa Woo, Susan E.W. De La Cruz
Consistent individual differences and plasticity in migration behaviour of three North American ungulates Consistent individual differences and plasticity in migration behaviour of three North American ungulates
Migratory herbivores often time spring migration to coincide with the green-up of plants. When the timing of green-up changes across years, herbivores can respond directly and be plastic to changing conditions or populations may adapt via inherent differences among individuals that may allow for an evolutionary response. We quantified plasticity and individual variation in the timing of...
Authors
Michel P. Laforge, Eric Vander Wal, Quinn M.R. Webber, Chris Geremia, Matthew J. Kauffman, Douglas E. McWhirter, Arthur Middleton, Tony W. Mong, Kevin L. Monteith, Anna C. Ortega, Hall Sawyer, Jerod A. Merkle