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Cyanobacteria Assessment Network: Pilot study with Sentinel-2 derived chlorophyll data

September 14, 2026

Harmful algal blooms (HABs) affect global water quality, limiting uses like recreation and consumption because of excessive algal biomass and toxin production. These blooms cause surface scums, taste and odor issues, hypoxia, and negative health and socioeconomic impacts. The US Army Corps of Engineers (USACE) manages over 400 lakes and reservoirs and seeks to improve monitoring of HABs through Sentinel-2 (S2) satellite imagery. The purpose of this project is to develop workflows for a national chlorophyll-a product with 20 m spatial resolution, enabling HAB monitoring for over 270,000 lakes and reservoirs. The 1-year pilot study established a federal partnership to conduct preliminary S2 processing steps, using datasets from Florida, Ohio, and Oregon. Key steps included in situ data aggregation, data assimilation, S2 algorithm evaluation, spatial and temporal compositing, satellite sensor cross-validation, and web hosting of an example prototype product. The study covers 29 USACE reservoirs, with cross-validation using Sentinel-3 (S3) data from 212 lakes. The multiagency initiative aligns with federal agency missions to protect health and the environment, supports acts like the 2017 Harmful Algal Bloom and Hypoxia Research and Control Act, and has annual potential avoided  costs of \$42 million. 

Publication Year 2026
Title Cyanobacteria Assessment Network: Pilot study with Sentinel-2 derived chlorophyll data
DOI 10.21079/11681/50466
Authors Blake Schaeffer, Tyler King, Molly Reif, Bridget N. Seegers, Richard P. Stumpf, Megan M. Coffer, Dylan Friel, Veronica Lance, Sachidananda Mishra, Michael Soracco, Michelle Tomlinson, Michael Frederick Meyer, Scott D. Ducar, Schuyler C. Nardelli, Keith Bouma-Gregson, Dulcinea Marie Avouris, Wilson Barg Salls
Publication Type Report
Publication Subtype Federal Government Series
Series Title Technical Report
Series Number ERDC-/EL TR-26-12
Index ID 70280420
Record Source USGS Publications Warehouse
USGS Organization California Water Science Center; Idaho Water Science Center; New York Water Science Center; WMA - Observing Systems Division
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