Andy Ramey, Ph.D.
Andy Ramey is the Director of the Molecular Ecology Lab at the USGS Alaska Science Center. He leads a team of scientists that develop and apply genomic tools to advance research pertaining to wildlife health and disease, population genetics, and environmental DNA. Research in the Molecular Ecology Lab promotes informed decisions regarding the conservation of fish and wildlife resources.
Andy Ramey currently serves as the Director of the Molecular Ecology Lab at the USGS Alaska Science Center. Scientists working in the Molecular Ecology Lab develop and apply tools to obtain information on the health, distribution, and genomic characteristics of biological natural resources. This includes collecting and interpreting data on the health and disease status of fish and wildlife, the genomics of animal and plant populations, and the distribution of animals and pathogens using environmental DNA. Information is used by partners and the public to make informed decisions regarding the conservation of fish and wildlife resources.
Professional Experience
2012–Present Research Wildlife Geneticist, USGS Alaska Science Center, Alaska
2006–2012 Geneticist, USGS Alaska Science Center, Alaska
2003–2006 Wildlife Biologist, USGS Alaska Science Center, Alaska
2001–2002 Biological Science Technician, Togiak National Wildlife Refuge, Alaska
Education and Certifications
Ph.D. 2015 University of Georgia, Athens, GA Veterinary and Biomedical Sciences
B.S. 2001 Colorado State University, Fort Collins, CO Fishery Biology and Wildlife Biology
Affiliations and Memberships*
Associate Editor: Journal of Wildlife Diseases (2016–present)
Associate Editor: Ornithology (2020–2024)
Member: American Association for the Advancement of Science, American Ornithological Society (elected), Wildlife Disease Association
Reviewer: more than 40 journal outlets
Science and Products
Filter Total Items: 13
Filter Total Items: 31
No Result Found
Filter Total Items: 119
Confronting models with data: The challenges of estimating disease spillover Confronting models with data: The challenges of estimating disease spillover
For pathogens known to transmit across host species, strategic investment in disease control requires knowledge about where and when spillover transmission is likely. One approach to estimating spillover is to directly correlate observed spillover events with covariates. An alternative is to mechanistically combine information on host density, distribution, and pathogen prevalence to...
Authors
Paul C. Cross, Diann Prosser, Andrew M. Ramey, Ephraim M. Hanks, Kim M. Pepin
Early emergence of mcr-1-positive Enterobacteriaceae in gulls from Spain and Portugal Early emergence of mcr-1-positive Enterobacteriaceae in gulls from Spain and Portugal
We tested extended‐spectrum β‐lactamase producing bacteria from wild gulls (Larusspp.) sampled in 2009 for the presence of mcr‐1. We report the detection of mcr‐1 and describe genome characteristics of four Escherichia coli and one Klebsiella pneumoniaeisolate from Spain and Portugal that also exhibited colistin resistance. Results represent the earliest evidence for colistin‐resistant...
Authors
Christina Ahlstrom, Andrew M. Ramey, Hanna Woksepp, Jonas Bonnedahl
Repeated detection of carbapenemase-producing Escherichia coli in gulls inhabiting Alaska, USA Repeated detection of carbapenemase-producing Escherichia coli in gulls inhabiting Alaska, USA
We report the first detection of carbapenemase-producing Escherichia coli in Alaska and in wildlife in the United States. Wild bird (gull) feces sampled at three locations in Southcentral Alaska yielded isolates that harbored plasmid-encoded blaKPC-2 or chromosomally-encoded blaOXA-48, and genes associated with antimicrobial resistance to up to eight antibiotic classes.
Authors
Christina Ahlstrom, Andrew M. Ramey, Hanna Woksepp, Jonas Bonnedahl
Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds
Background In the North Pacific, northern fulmar (Fulmarus glacialis) forms extensive colonies in few locales, which may lead to limited gene flow and locale-specific population threats. In the Atlantic, there are thousands of colonies of varying sizes and in Europe the species is considered threatened. Prior screens and classical microsatellite development in fulmar failed to provide a...
Authors
Megan C. Gravley, George K. Sage, Andrew M. Ramey, Scott A. Hatch, Verena A. Gill, Jolene R. Rearick, Aevar Petersen, Sandra L. Talbot
Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion
Background Avian avulavirus (commonly known as avian paramyxovirus-1 or APMV-1) can cause disease of varying severity in both domestic and wild birds. Understanding how viruses move among hosts and geography would be useful for informing prevention and control efforts. A Bayesian statistical framework was employed to estimate the evolutionary history of 1602 complete fusion gene APMV-1...
Authors
Joseph T. Hicks, Kiril M. Dimitrov, Claudio L. Afonso, Andrew M. Ramey, Justin Bahl
Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal
Emperor geese (Anser canagicus) are endemic to coastal areas within Beringia and have previously been found to have antibodies to or to be infected with influenza A viruses (IAVs) in Alaska. In this study, we use virological, serological and tracking data to further elucidate the role of emperor geese in the ecology of IAVs in Beringia during the non‐breeding period. Specifically, we...
Authors
Andrew M. Ramey, Brian D. Uher-Koch, Andrew B. Reeves, Joel A. Schmutz, Rebecca L. Poulson, David E. Stallknecht
Satellite tracking of gulls and genomic characterization of fecal bacteria reveals environmentally mediated acquisition and dispersal of antimicrobial resistant Escherichia coli on the Kenai Peninsula, Alaska Satellite tracking of gulls and genomic characterization of fecal bacteria reveals environmentally mediated acquisition and dispersal of antimicrobial resistant Escherichia coli on the Kenai Peninsula, Alaska
Gulls (Larus spp.) have frequently been reported to carry Escherichia coli exhibiting antimicrobial resistance (AMR E. coli); however, the pathways governing the acquisition and dispersal of such bacteria are not well-described. We equipped 17 landfill-foraging gulls with satellite transmitters and collected gull fecal samples longitudinally from four locations on the Kenai Peninsula...
Authors
Christina Ahlstrom, Jonas Bonnedahl, Hanna Woksepp, Jorge Hernandez, John Reed, T. Lee Tibbitts, Bjorn Olsen, David C. Douglas, Andrew M. Ramey
Serologic evidence for influenza A virus exposure in three loon species (Gavia spp.) breeding in Alaska Serologic evidence for influenza A virus exposure in three loon species (Gavia spp.) breeding in Alaska
Limited information exists about exposure to influenza A viruses (IAVs) in many wild waterbird species, including loons. We analyzed serum samples from breeding adult Pacific (Gavia pacifica), Red-throated (Gavia stellata), and Yellow-billed (Gavia adamsii) loons sampled at three locations along the coast of Alaska, US from 2008 to 2017 to gain a better understanding of the potential...
Authors
Brian D. Uher-Koch, Timothy J. Spivey, Caroline R. Van Hemert, Joel A. Schmutz, Kaijun Jiang, Xiu-Feng Wan, Andrew M. Ramey
Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast
Wild birds in the order Anseriformes are important reservoirs for influenza A viruses (IAV); however, IAV prevalence and subtype diversity may vary by season, even at the same location. To better understand the ecology of IAV during waterfowl migration through the Gulf Coast of the United States (Louisiana and Texas), surveillance of blue-winged (Spatula discors) and American green...
Authors
Deborah Carter, Paul T. Link, Patrick Walther, Andrew M. Ramey, David E. Stallknecht, Rebecca L. Poulson
Limited detection of antibodies to clade 2.3.4.4 A/Goose/Guangdong/1/1996 lineage highly pathogenic H5 avian influenza virus in North American waterfowl Limited detection of antibodies to clade 2.3.4.4 A/Goose/Guangdong/1/1996 lineage highly pathogenic H5 avian influenza virus in North American waterfowl
During 2014, highly pathogenic (HP) influenza A viruses (IAVs) of the A/Goose/Guangdong/1/1996 lineage (GsGD-HP-H5), originating from Asia, were detected in domestic poultry and wild birds in Canada and the US. These clade 2.3.4.4 GsGD-HP-H5 viruses included reassortants possessing North American lineage gene segments; were detected in wild birds in the Pacific, Central, and Mississippi...
Authors
David E. Stallknecht, Clara Kienzle-Dean, Nick Davis-Fields, Christopher S. Jennelle, Andrew S. Bowman, Jacqueline M. Nolting, Walter Boyce, James Crum, Jefferson Santos, Justin D. Brown, Diann Prosser, Susan E.W. De La Cruz, Joshua T. Ackerman, Michael L. Casazza, Scott Krauss, Daniel Perez, Andrew M. Ramey, Rebecca L. Poulson
Exposure of Alaska brown bears (Ursus arctos) to bacterial, viral, and parasitic agents varies spatiotemporally and may be influenced by age Exposure of Alaska brown bears (Ursus arctos) to bacterial, viral, and parasitic agents varies spatiotemporally and may be influenced by age
We collected blood and serum from 155 brown bears (Ursus arctos) inhabiting five locations in Alaska during 2013–16 and tested samples for evidence of prior exposure to a suite of bacterial, viral, and parasitic agents. Antibody seroprevalence among Alaska brown bears was estimated to be 15% for Brucella spp., 10% for Francisella tularensis, 7% for Leptospira spp., 18% for canine...
Authors
Andrew M. Ramey, Christopher A. Cleveland, Grant V. Hilderbrand, Kyle Joly, David D. Gustine, Buck Mangipane, William B. Leacock, Anthony P. Crupi, Dolores E. Hill, Jitender P. Dubey, Michael J. Yabsley
Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals
Influenza A viruses (IAVs) are maintained in wild waterbirds and have the potential to infect a broad range of species, including wild mammals. The Arctic Coastal Plain of Alaska supports a diverse suite of species, including waterfowl that are common hosts of IAVs. Mammals co-occur with geese and other migratory waterbirds during the summer breeding season, providing a plausible...
Authors
Caroline R. Van Hemert, Timothy J. Spivey, Brian D. Uher-Koch, Todd C. Atwood, David R. Sinnett, Brandt W. Meixell, Jerry W. Hupp, Kaijun Jiang, Layne G. Adams, David D. Gustine, Andrew M. Ramey, Xiu-Feng Wan
Science and Products
Filter Total Items: 13
Filter Total Items: 31
No Result Found
Filter Total Items: 119
Confronting models with data: The challenges of estimating disease spillover Confronting models with data: The challenges of estimating disease spillover
For pathogens known to transmit across host species, strategic investment in disease control requires knowledge about where and when spillover transmission is likely. One approach to estimating spillover is to directly correlate observed spillover events with covariates. An alternative is to mechanistically combine information on host density, distribution, and pathogen prevalence to...
Authors
Paul C. Cross, Diann Prosser, Andrew M. Ramey, Ephraim M. Hanks, Kim M. Pepin
Early emergence of mcr-1-positive Enterobacteriaceae in gulls from Spain and Portugal Early emergence of mcr-1-positive Enterobacteriaceae in gulls from Spain and Portugal
We tested extended‐spectrum β‐lactamase producing bacteria from wild gulls (Larusspp.) sampled in 2009 for the presence of mcr‐1. We report the detection of mcr‐1 and describe genome characteristics of four Escherichia coli and one Klebsiella pneumoniaeisolate from Spain and Portugal that also exhibited colistin resistance. Results represent the earliest evidence for colistin‐resistant...
Authors
Christina Ahlstrom, Andrew M. Ramey, Hanna Woksepp, Jonas Bonnedahl
Repeated detection of carbapenemase-producing Escherichia coli in gulls inhabiting Alaska, USA Repeated detection of carbapenemase-producing Escherichia coli in gulls inhabiting Alaska, USA
We report the first detection of carbapenemase-producing Escherichia coli in Alaska and in wildlife in the United States. Wild bird (gull) feces sampled at three locations in Southcentral Alaska yielded isolates that harbored plasmid-encoded blaKPC-2 or chromosomally-encoded blaOXA-48, and genes associated with antimicrobial resistance to up to eight antibiotic classes.
Authors
Christina Ahlstrom, Andrew M. Ramey, Hanna Woksepp, Jonas Bonnedahl
Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds
Background In the North Pacific, northern fulmar (Fulmarus glacialis) forms extensive colonies in few locales, which may lead to limited gene flow and locale-specific population threats. In the Atlantic, there are thousands of colonies of varying sizes and in Europe the species is considered threatened. Prior screens and classical microsatellite development in fulmar failed to provide a...
Authors
Megan C. Gravley, George K. Sage, Andrew M. Ramey, Scott A. Hatch, Verena A. Gill, Jolene R. Rearick, Aevar Petersen, Sandra L. Talbot
Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion
Background Avian avulavirus (commonly known as avian paramyxovirus-1 or APMV-1) can cause disease of varying severity in both domestic and wild birds. Understanding how viruses move among hosts and geography would be useful for informing prevention and control efforts. A Bayesian statistical framework was employed to estimate the evolutionary history of 1602 complete fusion gene APMV-1...
Authors
Joseph T. Hicks, Kiril M. Dimitrov, Claudio L. Afonso, Andrew M. Ramey, Justin Bahl
Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal
Emperor geese (Anser canagicus) are endemic to coastal areas within Beringia and have previously been found to have antibodies to or to be infected with influenza A viruses (IAVs) in Alaska. In this study, we use virological, serological and tracking data to further elucidate the role of emperor geese in the ecology of IAVs in Beringia during the non‐breeding period. Specifically, we...
Authors
Andrew M. Ramey, Brian D. Uher-Koch, Andrew B. Reeves, Joel A. Schmutz, Rebecca L. Poulson, David E. Stallknecht
Satellite tracking of gulls and genomic characterization of fecal bacteria reveals environmentally mediated acquisition and dispersal of antimicrobial resistant Escherichia coli on the Kenai Peninsula, Alaska Satellite tracking of gulls and genomic characterization of fecal bacteria reveals environmentally mediated acquisition and dispersal of antimicrobial resistant Escherichia coli on the Kenai Peninsula, Alaska
Gulls (Larus spp.) have frequently been reported to carry Escherichia coli exhibiting antimicrobial resistance (AMR E. coli); however, the pathways governing the acquisition and dispersal of such bacteria are not well-described. We equipped 17 landfill-foraging gulls with satellite transmitters and collected gull fecal samples longitudinally from four locations on the Kenai Peninsula...
Authors
Christina Ahlstrom, Jonas Bonnedahl, Hanna Woksepp, Jorge Hernandez, John Reed, T. Lee Tibbitts, Bjorn Olsen, David C. Douglas, Andrew M. Ramey
Serologic evidence for influenza A virus exposure in three loon species (Gavia spp.) breeding in Alaska Serologic evidence for influenza A virus exposure in three loon species (Gavia spp.) breeding in Alaska
Limited information exists about exposure to influenza A viruses (IAVs) in many wild waterbird species, including loons. We analyzed serum samples from breeding adult Pacific (Gavia pacifica), Red-throated (Gavia stellata), and Yellow-billed (Gavia adamsii) loons sampled at three locations along the coast of Alaska, US from 2008 to 2017 to gain a better understanding of the potential...
Authors
Brian D. Uher-Koch, Timothy J. Spivey, Caroline R. Van Hemert, Joel A. Schmutz, Kaijun Jiang, Xiu-Feng Wan, Andrew M. Ramey
Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast
Wild birds in the order Anseriformes are important reservoirs for influenza A viruses (IAV); however, IAV prevalence and subtype diversity may vary by season, even at the same location. To better understand the ecology of IAV during waterfowl migration through the Gulf Coast of the United States (Louisiana and Texas), surveillance of blue-winged (Spatula discors) and American green...
Authors
Deborah Carter, Paul T. Link, Patrick Walther, Andrew M. Ramey, David E. Stallknecht, Rebecca L. Poulson
Limited detection of antibodies to clade 2.3.4.4 A/Goose/Guangdong/1/1996 lineage highly pathogenic H5 avian influenza virus in North American waterfowl Limited detection of antibodies to clade 2.3.4.4 A/Goose/Guangdong/1/1996 lineage highly pathogenic H5 avian influenza virus in North American waterfowl
During 2014, highly pathogenic (HP) influenza A viruses (IAVs) of the A/Goose/Guangdong/1/1996 lineage (GsGD-HP-H5), originating from Asia, were detected in domestic poultry and wild birds in Canada and the US. These clade 2.3.4.4 GsGD-HP-H5 viruses included reassortants possessing North American lineage gene segments; were detected in wild birds in the Pacific, Central, and Mississippi...
Authors
David E. Stallknecht, Clara Kienzle-Dean, Nick Davis-Fields, Christopher S. Jennelle, Andrew S. Bowman, Jacqueline M. Nolting, Walter Boyce, James Crum, Jefferson Santos, Justin D. Brown, Diann Prosser, Susan E.W. De La Cruz, Joshua T. Ackerman, Michael L. Casazza, Scott Krauss, Daniel Perez, Andrew M. Ramey, Rebecca L. Poulson
Exposure of Alaska brown bears (Ursus arctos) to bacterial, viral, and parasitic agents varies spatiotemporally and may be influenced by age Exposure of Alaska brown bears (Ursus arctos) to bacterial, viral, and parasitic agents varies spatiotemporally and may be influenced by age
We collected blood and serum from 155 brown bears (Ursus arctos) inhabiting five locations in Alaska during 2013–16 and tested samples for evidence of prior exposure to a suite of bacterial, viral, and parasitic agents. Antibody seroprevalence among Alaska brown bears was estimated to be 15% for Brucella spp., 10% for Francisella tularensis, 7% for Leptospira spp., 18% for canine...
Authors
Andrew M. Ramey, Christopher A. Cleveland, Grant V. Hilderbrand, Kyle Joly, David D. Gustine, Buck Mangipane, William B. Leacock, Anthony P. Crupi, Dolores E. Hill, Jitender P. Dubey, Michael J. Yabsley
Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals
Influenza A viruses (IAVs) are maintained in wild waterbirds and have the potential to infect a broad range of species, including wild mammals. The Arctic Coastal Plain of Alaska supports a diverse suite of species, including waterfowl that are common hosts of IAVs. Mammals co-occur with geese and other migratory waterbirds during the summer breeding season, providing a plausible...
Authors
Caroline R. Van Hemert, Timothy J. Spivey, Brian D. Uher-Koch, Todd C. Atwood, David R. Sinnett, Brandt W. Meixell, Jerry W. Hupp, Kaijun Jiang, Layne G. Adams, David D. Gustine, Andrew M. Ramey, Xiu-Feng Wan
*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government