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Daniel S Donnelly

Areas of research interest: Population dynamics; life history variations in response to anthropogenic impact

As a member of the Seabird and Forage Fish ecology group, my projects focus on how population dynamics and life history variation of forage fish affect seabirds and other marine predators in Prince William Sound, Cook Inlet, and the Gulf of Alaska. A large portion of our work is conducted using the 50-foot converted seiner R/V Alaskan Gyre as a research platform. From the deck of the Gyre, we conduct line transect surveys for seabirds, mid-water trawls to sample forage fishes and invertebrates, hydroacoustic surveys, a variety of water quality sampling, and prepare eDNA and water samples for later analysis using a modified lab space below.

Professional Experience

  • 2021 - Present   Biologist; US Geological Survey, Alaska Science Center, Anchorage AK.

  • 2018 - 2021        Prince William Sound Zone Fish Biologist; US Forest Service, Chugach NF, Cordova AK.

  • 2018                    Fishery Biologist, USGS Alaska Science Center, Anchorage AK

  • 2017 - 2018        South Zone Fish Biologist, USFS Nez Perce-Clearwater National Forest, Elk City ID

  • 2014 - 2017        Fisheries Technician; US Fish and Wildlife Service, Fairbanks AK/Grand Junction CO.

  • 2013                     Fisheries Technician, Idaho cooperative fish and wildlife research unit, University of Idaho, Moscow, ID.

Affiliations and Memberships*

  • American Fisheries Society

Honors and Awards

  • 2014 - 2015  University of Idaho   Outstanding Fisheries Senior

Science and Products

link
A Tufted Puffin swimming in the sea in Lower Cook Inlet, Alaska

Seabirds and Forage Fish Ecology

Alaska's coastal and offshore waters provide foraging habitat for an estimated 100 million birds comprising more than 90 different species; from loons and seaducks that nest inland, to petrels and puffins that breed on islands off shore. All these birds depend on the sea to provide a wide variety of food types— from clams, crabs and urchins nearshore— to krill, forage fish, and squid offshore. The...
By
Ecosystems Mission Area, Land Management Research Program, Species Management Research Program, Alaska Science Center
link

Seabirds and Forage Fish Ecology

Alaska's coastal and offshore waters provide foraging habitat for an estimated 100 million birds comprising more than 90 different species; from loons and seaducks that nest inland, to petrels and puffins that breed on islands off shore. All these birds depend on the sea to provide a wide variety of food types— from clams, crabs and urchins nearshore— to krill, forage fish, and squid offshore. The...
Learn More
link
2 Black-legged Kittiwakes, one captured Pacific sand lance

Cook Inlet Seabird and Forage Fish Study

A massive die-off of Common Murres was documented in the Gulf of Alaska (GOA) during the fall and winter of 2015-2016 in association with a record-breaking marine heat wave in the GOA.
By
Species Management Research Program, Alaska Science Center
link

Cook Inlet Seabird and Forage Fish Study

A massive die-off of Common Murres was documented in the Gulf of Alaska (GOA) during the fall and winter of 2015-2016 in association with a record-breaking marine heat wave in the GOA.
Learn More

Water Temperature and Dissolved Oxygen Measured During a Manipulative Thermal Challenge Experiment for Adult Salmonids, Yukon River, Alaska, 2018

This data set documents the temperature and dissolved oxygen of water during the implementation of a new experimental thermal challenge protocol for migrating adult Pacific salmon in remote settings. This experiment was conducted with migrating adult Chinook salmon near Pilot Station, Alaska, along the Yukon River in a location without access to utilities. The analysis of this data was published i
By
Alaska Science Center

Quantifying spatiotemporal variation of nearshore forage fish schools with aerial surveys in Prince William Sound, Alaska

ObjectiveChanges in abundance and distribution of schooling forage fish, such as the Pacific Sand Lance Ammodytes hexapterus and Pacific Herring Clupea pallasii, can be difficult to document using traditional boat-based methods, especially in the shallow, nearshore habitats frequented by these species. In contrast, nearshore fish schools are easily observed and quantified from aircraft when light
Authors
Daniel Stephen Donnelly, Mayumi L. Arimitsu, Scott Pegau, John F. Piatt
By
Alaska Science Center

Monitoring long-term changes in forage fish distribution, abundance and body condition in Prince William Sound

Identifying drivers of change in forage fish populations is key to understanding recovery potential for piscivorous species injured by the Exxon Valdez oil spill, and ecosystem response to natural and anthropogenic perturbations. Forage fish are small pelagic schooling fish such as Pacific capelin (Mallotus catervarius), Pacific sand lance (Ammodytes personatus), Pacific herring (Clupea pallasii),
Authors
Mayumi L. Arimitsu, John F. Piatt, Scott Hatch, Caitlin Elizabeth Marsteller, Daniel Stephen Donnelly, Shannon Whelan
By
Alaska Science Center

A manipulative thermal challenge protocol for adult salmonids in remote field settings

Manipulative experiments provide stronger evidence for identifying cause-and-effect relationships than correlative studies, but protocols for implementing temperature manipulations are lacking for large species in remote settings. We developed an experimental protocol for holding adult Chinook salmon (Oncorhynchus tshawytscha) and exposing them to elevated temperature treatments. The goal of the e
Authors
Daniel S. Donnelly, Vanessa R. von Biela, Stephen D. McCormick, Sarah M. Laske, Michael P. Carey, Shannon C. Waters, Lizabeth Bowen, Randy J Brown, Sean Larson, Christian E. Zimmerman
By
Ecosystems Mission Area, Eastern Ecological Science Center, Alaska Science Center, Western Ecological Research Center (WERC)

Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)

Chinook salmon (Oncorhynchus tshawytscha) declines are widespread and may be attributed, at least in part, to warming river temperatures. Water temperatures in the Yukon River and tributaries often exceed 18°C, a threshold commonly associated with heat stress and elevated mortality in Pacific salmon. Untangling the complex web of direct and indirect physiological effects of heat stress on salmon i
Authors
Lizabeth Bowen, Vanessa R. von Biela, Stephen D. McCormick, Amy M. Regish, Shannon C. Waters, Blythe Durbin-Johnson, Monica Britton, Matt Settles, Daniel S. Donnelly, Sarah M. Laske, Michael P. Carey, Randy J Brown, Christian E. Zimmerman
By
Ecosystems Mission Area, Eastern Ecological Science Center, Alaska Science Center, Western Ecological Research Center (WERC)

Evidence of prevalent heat stress in Yukon River Chinook salmon

Migrating adult Pacific salmon (Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon (O. tshawytscha) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific salmon popu
Authors
Vanessa R. von Biela, Lizabeth Bowen, Stephen D. McCormick, Michael P. Carey, Daniel S. Donnelly, Shannon C. Waters, Amy M. Regish, Sarah M. Laske, Randy J Brown, Sean Larson, Stan Zuray, Christian E. Zimmerman
By
Ecosystems Mission Area, Alaska Science Center

Science and Products

link
A Tufted Puffin swimming in the sea in Lower Cook Inlet, Alaska

Seabirds and Forage Fish Ecology

Alaska's coastal and offshore waters provide foraging habitat for an estimated 100 million birds comprising more than 90 different species; from loons and seaducks that nest inland, to petrels and puffins that breed on islands off shore. All these birds depend on the sea to provide a wide variety of food types— from clams, crabs and urchins nearshore— to krill, forage fish, and squid offshore. The...
By
Ecosystems Mission Area, Land Management Research Program, Species Management Research Program, Alaska Science Center
link

Seabirds and Forage Fish Ecology

Alaska's coastal and offshore waters provide foraging habitat for an estimated 100 million birds comprising more than 90 different species; from loons and seaducks that nest inland, to petrels and puffins that breed on islands off shore. All these birds depend on the sea to provide a wide variety of food types— from clams, crabs and urchins nearshore— to krill, forage fish, and squid offshore. The...
Learn More
link
2 Black-legged Kittiwakes, one captured Pacific sand lance

Cook Inlet Seabird and Forage Fish Study

A massive die-off of Common Murres was documented in the Gulf of Alaska (GOA) during the fall and winter of 2015-2016 in association with a record-breaking marine heat wave in the GOA.
By
Species Management Research Program, Alaska Science Center
link

Cook Inlet Seabird and Forage Fish Study

A massive die-off of Common Murres was documented in the Gulf of Alaska (GOA) during the fall and winter of 2015-2016 in association with a record-breaking marine heat wave in the GOA.
Learn More

Water Temperature and Dissolved Oxygen Measured During a Manipulative Thermal Challenge Experiment for Adult Salmonids, Yukon River, Alaska, 2018

This data set documents the temperature and dissolved oxygen of water during the implementation of a new experimental thermal challenge protocol for migrating adult Pacific salmon in remote settings. This experiment was conducted with migrating adult Chinook salmon near Pilot Station, Alaska, along the Yukon River in a location without access to utilities. The analysis of this data was published i
By
Alaska Science Center

Quantifying spatiotemporal variation of nearshore forage fish schools with aerial surveys in Prince William Sound, Alaska

ObjectiveChanges in abundance and distribution of schooling forage fish, such as the Pacific Sand Lance Ammodytes hexapterus and Pacific Herring Clupea pallasii, can be difficult to document using traditional boat-based methods, especially in the shallow, nearshore habitats frequented by these species. In contrast, nearshore fish schools are easily observed and quantified from aircraft when light
Authors
Daniel Stephen Donnelly, Mayumi L. Arimitsu, Scott Pegau, John F. Piatt
By
Alaska Science Center

Monitoring long-term changes in forage fish distribution, abundance and body condition in Prince William Sound

Identifying drivers of change in forage fish populations is key to understanding recovery potential for piscivorous species injured by the Exxon Valdez oil spill, and ecosystem response to natural and anthropogenic perturbations. Forage fish are small pelagic schooling fish such as Pacific capelin (Mallotus catervarius), Pacific sand lance (Ammodytes personatus), Pacific herring (Clupea pallasii),
Authors
Mayumi L. Arimitsu, John F. Piatt, Scott Hatch, Caitlin Elizabeth Marsteller, Daniel Stephen Donnelly, Shannon Whelan
By
Alaska Science Center

A manipulative thermal challenge protocol for adult salmonids in remote field settings

Manipulative experiments provide stronger evidence for identifying cause-and-effect relationships than correlative studies, but protocols for implementing temperature manipulations are lacking for large species in remote settings. We developed an experimental protocol for holding adult Chinook salmon (Oncorhynchus tshawytscha) and exposing them to elevated temperature treatments. The goal of the e
Authors
Daniel S. Donnelly, Vanessa R. von Biela, Stephen D. McCormick, Sarah M. Laske, Michael P. Carey, Shannon C. Waters, Lizabeth Bowen, Randy J Brown, Sean Larson, Christian E. Zimmerman
By
Ecosystems Mission Area, Eastern Ecological Science Center, Alaska Science Center, Western Ecological Research Center (WERC)

Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)

Chinook salmon (Oncorhynchus tshawytscha) declines are widespread and may be attributed, at least in part, to warming river temperatures. Water temperatures in the Yukon River and tributaries often exceed 18°C, a threshold commonly associated with heat stress and elevated mortality in Pacific salmon. Untangling the complex web of direct and indirect physiological effects of heat stress on salmon i
Authors
Lizabeth Bowen, Vanessa R. von Biela, Stephen D. McCormick, Amy M. Regish, Shannon C. Waters, Blythe Durbin-Johnson, Monica Britton, Matt Settles, Daniel S. Donnelly, Sarah M. Laske, Michael P. Carey, Randy J Brown, Christian E. Zimmerman
By
Ecosystems Mission Area, Eastern Ecological Science Center, Alaska Science Center, Western Ecological Research Center (WERC)

Evidence of prevalent heat stress in Yukon River Chinook salmon

Migrating adult Pacific salmon (Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon (O. tshawytscha) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific salmon popu
Authors
Vanessa R. von Biela, Lizabeth Bowen, Stephen D. McCormick, Michael P. Carey, Daniel S. Donnelly, Shannon C. Waters, Amy M. Regish, Sarah M. Laske, Randy J Brown, Sean Larson, Stan Zuray, Christian E. Zimmerman
By
Ecosystems Mission Area, Alaska Science Center

*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government