Publications
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Drowned river mouth lakes are winter foraging habitats for the expanding Lake Michigan cisco Coregonus artedi population Drowned river mouth lakes are winter foraging habitats for the expanding Lake Michigan cisco Coregonus artedi population
Characterizing fish movements is required for understanding habitat use, energy flow, and trophic structure and can inform fisheries management. Drowned river mouth (DRM) lakes are productive inland habitats in the Laurentian Great Lakes basin used by migratory fishes. Despite recognition of their ecological connections to the Great Lakes, the value of DRM lakes as seasonal habitats is...
Authors
Ralph Tingley, Darryl Hondorp, Benjamin Turschak, Steven Pothoven, Amanda Ackiss, Jory Jonas, William Fetzer, Benjamin Leonhardt, Andrew Honsey, Jeff Elliott, Lindsie Ann Egedy, Cory Brant, Lynn Benes, Kendra Kozlauskos, Renee Renauer-Bova, Ann Ropp
MIMAR-Net: Multiscale Inception-based Manhattan Attention Residual Network and its application to underwater image super-resolution MIMAR-Net: Multiscale Inception-based Manhattan Attention Residual Network and its application to underwater image super-resolution
In recent years, Single-Image Super-Resolution (SISR) has gained significant attention in the geoscience and remote sensing community for its potential to improve the resolution of low-quality underwater imagery. This paper introduces MIMAR-Net ( Multiscale Inception-based Manhattan Attention Residual Network), a new deep learning architecture designed to increase the spatial resolution...
Authors
Nusrat Zahan, Sidike Paheding, Ashraf Saleem, Timothy Havens, Peter C. Esselman
Movements and survival of hatchery reared juvenile cisco (Coregonus artedi) in Saginaw Bay, Lake Huron Movements and survival of hatchery reared juvenile cisco (Coregonus artedi) in Saginaw Bay, Lake Huron
Background Cisco (Coregonus artedi) were historically abundant throughout Lake Huron, including Saginaw Bay, but only a few remnant populations remain in northern Lake Huron today. Reestablishment of cisco is an important component of management plans to restore sustainable fisheries in Lake Huron. Cisco restoration efforts have focused on the release of hatchery-reared fish, but the...
Authors
Todd Hayden, Christopher Holbrook, Thomas R. Binder, Andrew Honsey, Roger Gordon, Kevin McDonnell, David Fielder, Aaron T. Fisk
Linking bathythermal habitat selection to management of a migratory freshwater fish Linking bathythermal habitat selection to management of a migratory freshwater fish
Background For migratory fishes, habitat selection in dimensions of temperature and depth may be jointly used to define the bathythermal niche. Seasonal and long-term changes in the availability of bathythermal habitat can cause behavioral responses that have consequences for managing interjurisdictional fisheries that target migratory fishes. Management of such fisheries typically...
Authors
Richard Kraus, Matthew Faust, Scott Colborne, Christopher Vandergoot
Quantifying benthic flux of Mysis biomass through diel vertical migration at the ecosystem scale Quantifying benthic flux of Mysis biomass through diel vertical migration at the ecosystem scale
Mysis diluviana is a macroinvertebrate that couples benthic and pelagic habitats on a daily timescale through diel vertical migration (DVM). However, quantifying how much Mysis biomass is exchanged between benthic and pelagic habitats at an ecosystem scale is difficult because of sampling limitations and variability in Mysis DVM behavior related to light and depth. Although Mysis are...
Authors
Brian O’Malley, Georgia Hoffman, Rosaura Chapina, Jason Stockwell, Collin Farrell
Lake depth and light conditions alter Mysis vertical distributions Lake depth and light conditions alter Mysis vertical distributions
Light regulates the vertical migration of many aquatic organisms. Mysis species couple pelagic and benthic habitats in lakes by diel vertical migrations (DVM), transporting energy and nutrients through the water column and food web. Although Mysis are generally assumed to remain on the bottom during the day, some have been observed in the pelagic zone during the day, indicating...
Authors
Rosaura Chapina, Brian O’Malley, Kelly Bowen, Martta Viljanen, Zachary Bess, Daniel Yule, Jens Nejstgaard, Stella Berger, Michael Rennie, Michael Paterson, Steven Pothoven, James Watkins, Lars Rudstam, Sudeep Chandra, Jason Stockwell
Water temperature analysis of the North Branch Au Sable River, Michigan, and implications to salmonid populations Water temperature analysis of the North Branch Au Sable River, Michigan, and implications to salmonid populations
Ambient stream water temperatures affect salmonid movement and survival with fish actively seeking thermal refugia from warming waters. This study sought to investigate the potential role of water temperature in the perceived decline in native Brook Trout Salvelinus fontinalis and non-native Brown Trout Salmo trutta populations in the North Branch Au Sable River by fishers and reported...
Authors
Nicole Watson, Daniel Hayes, Neal Godby
Unique thermal mixing patterns in Lake Ontario revealed by novel year-round observations of thermal stratification Unique thermal mixing patterns in Lake Ontario revealed by novel year-round observations of thermal stratification
Year-round records of thermal stratification in the Great Lakes are rare, and there are few observations of thermal stratification during winter. In this paper, we analyze temperature data from 13 temperature logger chains and from over 130 benthic acoustic receivers that were deployed across Lake Ontario for 2 yr. The timing and duration of the fall overturn correlate with the local...
Authors
Mathew Wells, Tim Johnson, Rylie Robinson, Jon Midwood, Yulu Shi, Sarah M. Larocque, Adam Eddie, Brian O’Malley, Kyle Morton, Dimitri Gorsky, Bruce Tufts
Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys
Objective The potential for environmental DNA (eDNA) to disperse widely from source organisms enables high detection efficiency but raises questions about eDNA's ability to differentiate fine-scale spatial patterns relative to conventional fish capture data.Methods We evaluate these questions in the St. Louis River estuary—a hydrologically and spatially complex coastal system within Lake...
Authors
Anett Trebitz, Joel Hoffman, Gregory Peterson, Chelsea Hatzenbuhler, Erik Pilgrim, Sara Okum, W. Chadderton, Andrew Tucker, Nicholas Bogyo, Jared Myers
Dispersal and survival of sea lamprey in Lake Erie and connected waterways Dispersal and survival of sea lamprey in Lake Erie and connected waterways
Invasive sea lamprey inhabiting the North American Laurentian Great Lakes are the target of the world’s longest running vertebrate invasive species control program. However, metapopulation dynamics comprising survival and dispersal during the sea lampreys’ lake-resident life stages are poorly understood. We applied acoustic telemetry and continuous-time multistate capture-recapture...
Authors
Sean Lewandoski, Christopher Holbrook
Ten lessons for controlling invasive species: Wisdom from the long-standing sea lamprey control program on the Laurentian Great Lakes Ten lessons for controlling invasive species: Wisdom from the long-standing sea lamprey control program on the Laurentian Great Lakes
Sea lamprey (Petromyzon marinus) control in the Laurentian Great Lakes of North America is among the largest and most successful control programs of an invasive species anywhere on the planet. The effort began more than 75 years ago; it unites multiple nations, states, and provinces with the common goal of controlling this invasive species and protecting a valuable fishery. The science...
Authors
Steven Cooke, Carrie Baker, Julie Mida Hinderer, Michael Siefkes, Jessica Barber, Todd B. Steeves, Margaret Docker, Weiming Li, Michael Wilkie, Michael Jones, Kelly Robinson, Erin Dunlop, Cory Brant, Nicholas Johnson, William Mattes, Marc Gaden, Andrew M. Muir
Development of PCR blocking primers enabling DNA metabarcoding analysis of dietary composition in hematophagous sea lamprey Development of PCR blocking primers enabling DNA metabarcoding analysis of dietary composition in hematophagous sea lamprey
Conventional dietary assessments are challenging in hematophagous species, particularly in sea lamprey (Petromyzon marinus). However, recent technological developments and molecular approaches have provided an attractive alternative through the use of DNA metabarcoding. While DNA metabarcoding has been used for dietary analyses in numerous species, including lampreys, applications of...
Authors
Conor O'Kane, Nicholas Johnson, Kim Scribner, Jeannette Kanefsky, Weiming Li, John Robinson