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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Please don't misuse the museum: 'declines' may be statistical Please don't misuse the museum: 'declines' may be statistical

Detecting declines in populations at broad spatial scales takes enormous effort, and long-term data are often more sparse than is desired for estimating trends, identifying drivers for population changes, framing conservation decisions or taking management actions. Museum records and historic data can be available at large scales across multiple decades, and are therefore an attractive...
Authors
Evan H. Campbell Grant

Hierarchical model analysis of the Atlantic Flyway Breeding Waterfowl Survey Hierarchical model analysis of the Atlantic Flyway Breeding Waterfowl Survey

We used log-linear hierarchical models to analyze data from the Atlantic Flyway Breeding Waterfowl Survey. The survey has been conducted by state biologists each year since 1989 in the northeastern United States from Virginia north to New Hampshire and Vermont. Although yearly population estimates from the survey are used by the United States Fish and Wildlife Service for estimating...
Authors
John R. Sauer, Guthrie S. Zimmerman, Jon D. Klimstra, William A. Link

Pharmacokinetics of buprenorphine hydrochloride following intramuscular and intravenous administration to American kestrels (Falco sparverius) Pharmacokinetics of buprenorphine hydrochloride following intramuscular and intravenous administration to American kestrels (Falco sparverius)

Objective—To determine the pharmacokinetics of buprenorphine hydrochloride after IM and IV administration to American kestrels (Falco sparverius). Animals—13 healthy 3-year-old captive-bred American kestrels. Procedures—Buprenorphine hydrochloride (0.6 mg/kg) was administered IM to all birds. Blood samples were collected at 9 times, ranging from 5 minutes to 9 hours after drug...
Authors
Kate A. Gustavsen, David Sanchez-Migallon Guzman, Heather K. Knych, Olivia A. Petritz, Glenn H. Olsen, Joanne R. Paul-Murphy

Inference for finite-sample trajectories in dynamic multi-state site-occupancy models using hidden Markov model smoothing Inference for finite-sample trajectories in dynamic multi-state site-occupancy models using hidden Markov model smoothing

Ecologists and wildlife biologists increasingly use latent variable models to study patterns of species occurrence when detection is imperfect. These models have recently been generalized to accommodate both a more expansive description of state than simple presence or absence, and Markovian dynamics in the latent state over successive sampling seasons. In this paper, we write these...
Authors
Ian J. Fiske, J. Andrew Royle, Kevin Gross

Below the disappearing marshes of an urban estuary: historic nitrogen trends and soil structure Below the disappearing marshes of an urban estuary: historic nitrogen trends and soil structure

Marshes in the urban Jamaica Bay Estuary, New York, USA are disappearing at an average rate of 13 ha/yr, and multiple stressors (e.g., wastewater inputs, dredging activities, groundwater removal, and global warming) may be contributing to marsh losses. Among these stressors, wastewater nutrients are suspected to be an important contributing cause of marsh deterioration. We used census...
Authors
Cathleen Wigand, Charles T. Roman, Earl Davey, Mark Stolt, Roxanne Johnson, Alana Hanson, Elizabeth B. Watson, S. Bradley Moran, Donald R. Cahoon, James C. Lynch, Patricia Rafferty

Radar analysis of fall bird migration stopover sites in the northeastern U.S. Radar analysis of fall bird migration stopover sites in the northeastern U.S.

The national network of weather surveillance radars (WSR-88D) detects flying birds and is a useful remote-sensing tool for ornithological study. We used data collected during fall 2008 and 2009 by 16 WSR-88D radars in the northeastern U.S. to quantify the spatial distribution of landbirds during migratory stopover. We geo-referenced estimates based on radar reflectivity, of the density...
Authors
Jeffrey J. Buler, Deanna K. Dawson

Reply to Efford on ‘Integrating resource selection information with spatial capture-recapture’ Reply to Efford on ‘Integrating resource selection information with spatial capture-recapture’

1. We proposed ( Methods in Ecology and Evolution, 2013, 4) a model for combining telemetry data with spatial capture–recapture (SCR) data that was vigorously criticized by Efford ( Methods in Ecology and Evolution, 2014, 000, 000). Efford's main claim was that our encounter probability model was incorrect, and therefore our R code and simulation results were wrong. 2. In fact, our...
Authors
J. Andrew Royle, Richard Chandler, Catherine C. Sun, Angela K. Fuller

Assessment of mitochondrial DNA damage in little brown bats (Myotis lucifugus) collected near a mercury-contaminated river Assessment of mitochondrial DNA damage in little brown bats (Myotis lucifugus) collected near a mercury-contaminated river

Historical discharges of Hg into the South River near the town of Waynesboro, VA, USA, have resulted in persistently elevated Hg concentrations in sediment, surface water, ground water, soil, and wildlife downstream of the discharge site. In the present study, we examined mercury (Hg) levels in in little brown bats ( Myotis lucifugus) from this location and assessed the utility of a non
Authors
Natalie K. Karouna-Renier, Carl White, Christopher R. Perkins, John J. Schmerfeld, David Yates

Can they dig it? Functional morphology and semifossoriality among small-eared shrews, genus Cryptotis (Mammalia, Soricidae) Can they dig it? Functional morphology and semifossoriality among small-eared shrews, genus Cryptotis (Mammalia, Soricidae)

Small-eared shrews (Mammalia: Soricidae: Cryptotis), exhibit modifications of the forelimb skeleton that have been interpreted as adaptations for semifossoriality. Most species inhabit remote regions, however, and their locomotory and foraging behaviors remain mostly speculative. To better understand the morphological modifications in the absence of direct observations, we quantified...
Authors
Neal Woodman, Sarah A. Gaffney

Multiseason occupancy models for correlated replicate surveys Multiseason occupancy models for correlated replicate surveys

Occupancy surveys collecting data from adjacent (sometimes correlated) spatial replicates have become relatively popular for logistical reasons. Hines et al. (2010) presented one approach to modelling such data for single-season occupancy surveys. Here, we present a multiseason analogue of this model (with corresponding software) for inferences about occupancy dynamics. We include a new
Authors
James E. Hines, James D. Nichols, Jaime Collazo

Reducing fatigue damage for ships in transit through structured decision making Reducing fatigue damage for ships in transit through structured decision making

Research in structural monitoring has focused primarily on drawing inference about the health of a structure from the structure’s response to ambient or applied excitation. Knowledge of the current state can then be used to predict structural integrity at a future time and, in principle, allows one to take action to improve safety, minimize ownership costs, and/or increase the operating...
Authors
J.M. Nichols, P.L. Fackler, K. Pacifici, K.D. Murphy, J.D. Nichols

Demography of a reintroduced population: moving toward management models for an endangered species, the whooping crane Demography of a reintroduced population: moving toward management models for an endangered species, the whooping crane

The reintroduction of threatened and endangered species is now a common method for reestablishing populations. Typically, a fundamental objective of reintroduction is to establish a self-sustaining population. Estimation of demographic parameters in reintroduced populations is critical, as these estimates serve multiple purposes. First, they support evaluation of progress toward the...
Authors
Sabrina Servanty, Sarah J. Converse, Larissa L. Bailey
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