Data

This data release contains standardized templates for individual-based genotype data. We provide two template packages: one for Short Tandem Repeat or Microsatellite (STR) genotype datasets [str_release.zip] and another for Single Nucleotide Polymorphism (SNP)/variant call genotype datasets [snp_release.zip]. The templates were developed to comply with standards for scientific data...

This data release includes high resolution in-situ elevation data collected in wetlands and adjacent ecosystems throughout the San Francisco Bay from 2015 to 2024. Elevation data were collected using real-time kinematic global positioning system receivers.

These data contain information about the sites, visits, and transects surveyed for Siskiyou Mountains salamanders (Plethodon stormi) and Scott Bar salamanders (P. asupak) in Siskiyou County, California, 2023-2024. The survey sites were near locations of recent (since 2005) historical occurrence of the salamanders and were designed to separate occurrence, availability on the surface, and...

These data contain information on stream characteristics (intermittency and temperature), vegetation (canopy and algal cover), amphibian, reptile, and fish observations, and pathogen (amphibian chytrid fungus, Batrachochytrium dendrobatidis) prevalence, all of which are relevant for the suitability of streams in Pinnacles National Park for the reintroduction of foothill yellow-legged...

We digitized water on the landscape for breeding waterfowl and other wetland-associated species within Suisun Marsh (California, USA) twice each year (spring and summer) during a 38-year period (1984-2021) with remote sensing methods that combined Landsat satellite imagery (composite images) and spectral mixture analysis using Google Earth Engine. This dataset contains the amount of...

This dataset includes apparent nest density (observed nests per hectare of area searched) of mallard (Anas platyrhynchos) and gadwall (Mareca strepera) in Suisun Marsh, California.

This dataset includes nest abundance of American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), and Forster's terns (Sterna forsteri) in south San Francisco Bay, California by year. It also contains California gull (Larus californicus) hazing research efforts. This dataset was generated from yearly nest monitoring surveys within wetlands in south San...

This dataset includes wetland habitat measurements, surrounding land cover metrics, and waterbird abundance and diversity during 240 surveys of 117 individual wetland units enrolled in the California Waterfowl Habitat Program. This dataset was generated from wetland surveys conducted in the Sacramento Valley, San Joaquin Valley, and Suisun Marsh in 2022 and 2023.

This dataset contains 184 single nucleotide polymorphism (SNP) genotypes of Campylorhynchus brunneicapillus (Cactus Wren) sampled in southern California. Genomic markers were generated from ddRAD loci and analyzed using the Stacks v2.60 pipeline. The genotypes for all samples are provided in a VCF file with 40,707 independent loci. A companion sample data file is provided with sample...

This dataset contains genotypes from 148 Harbison's dun skipper (Euphyes vestris harbisoni) collected in San Diego and Orange County, California (USA). Genomic markers were generated using the 2RAD restriction-associated DNA sequencing protocol, aligned to a reference genome of Euphyes dion (genome assembly GCA_018251475.1) and analyzed using Stacks v2.53. The genotypes for all samples...

Future sea-level rise poses a risk to mangrove forests. To better understand potential vulnerability, we developed a numerical model of soil elevation for mangrove forests. We used the model to generate projections of elevation and mangrove forest composition change under six sea-level rise scenarios from 2020 through 2150. We employed a data-driven modeling approach, utilizing new and...

We established a network of 121 plots distributed within the 2020 SQF, 2020 Rattlesnake, and 2021 KNP complex fire footprints (extracted from Fire and Resource Assessment Program (FRAP), https://frap.fire.ca.gov), as well as outside the fire perimeters to provide an unburned comparison. These plots were combined from two projects: a fire and fuels study (F&F) and the USGS sequoia...