Publications

We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to...

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2020 in response to U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on changes in population abundance and habitat use by...

The Yakama Nation manages a program for reintroducing Sockeye Salmon Oncorhynchus nerka upstream of Cle Elum Dam in the Yakima River basin. The program involves transplanting of a mix of adult Sockeye Salmon from two middle Columbia River donor stocks, Lake Wenatchee (WEN) and Osoyoos Lake (OSO), with the goal of establishing a self-sustaining population in the basin. In 2017, a subset...

A study was conducted during June–October 2020 to evaluate factors affecting the migration success of adult sockeye salmon (Oncorhynchus nerka) in the Yakima River, Washington. A total of 144 adult sockeye salmon were tagged and released during the study. Most fish (112 fish) were collected, tagged with passive integrated transponder (PIT), and released at the mouth of the Yakima River...

Fatty acid (FA) content and composition of zooplankton in Puget Sound, Washington (USA) was studied to investigate the nutritional quality of diverse zooplankton prey for juvenile salmon (Oncorhynchus spp.) in terms of their essential fatty acid (EFA) content. The study focus was on eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (ARA) as these are key FA...

We will investigate fish health factors that may be contributing to the failed recovery of Pacific herring populations in Prince William Sound. Field samples will provide infection and disease prevalence data from Prince William Sound and Sitka Sound to inform the age structured assessment (ASA) model, serological data will indicate the prior exposure history and future susceptibility of...

Environmental variation has important effects on host–pathogen interactions, affecting large-scale ecological processes such as the severity and frequency of epidemics. However, less is known about how the environment interacts with host immunity to modulate virus fitness within hosts. Here, we studied the interaction between host immune responses and water temperature on the long-term...

Drift-feeding fish are typically considered size-selective predators. Yet, few studies have explicitly tested which aspect of prey “size” best explains size selection by drift-foraging fish. Here, we develop a Bayesian discrete choice model to evaluate how attributes of both prey and predator simultaneously influence size-selective foraging. We apply the model to a large dataset of...

No abstract available.

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine...

Processes that allow viral hemorrhagic septicemia (VHS) virus to persist in the marine environment remain enigmatic, owing largely to the presence of covert and cryptic infections in marine fishes during typical sub-epizootic periods. As such, marine host reservoirs for VHS virus have not been fully demonstrated, nor have the mechanism(s) by which infected hosts contribute to virus...