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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42994

Understanding the links between functional performance and environment in cold desert ecosystems through the flagship biocrust forming moss Syntrichia caninervis Understanding the links between functional performance and environment in cold desert ecosystems through the flagship biocrust forming moss Syntrichia caninervis

Background and aims Biocrust communities shape the soil surface in drylands, regulating important ecosystem properties. Despite this, few works address key functional attributes in these poikilohydric photosynthetic communities, including the length of metabolic activity in the field and its relationship with microclimate. We aim to disentangle the links between functional performance of...
Authors
Jose Raggio, David S. Pescador, Edmund E. Grote, L.G. Sancho, Rebecca A Finger-Higgens, Jayne Belnap

Summertime methane and carbon dioxide emission rates and associated variables from a national-scale survey of 146 reservoirs in the United States Summertime methane and carbon dioxide emission rates and associated variables from a national-scale survey of 146 reservoirs in the United States

Reservoirs are globally important sources of greenhouse gases, but the magnitude of their emissions is highly uncertain. Here we present data for 146 reservoirs from two surveys of reservoir methane and carbon dioxide emissions, one at the regional scale in the midwestern United States and one at the national scale in the conterminous United States, plus data from one reservoir in...
Authors
Jake J. Beaulieu, Bridget R. Deemer, R.M. Pilla, Kenneth J. Forshay, J.W. Hollister, S.A. Jacobs, J.T. Walker, P.T. Leinenbach, Natalie A. Griffiths, S.D. Shivers, A.O. Tatters, K.N. Buckler, J.W. Corra, Ryan W. Daly, A.N. Djurkovic, S.R. Fulgham, P.L. Goodwin, L.G. Herger, M.W. Jones, N.J. Jones, L.A. Juilfs, C.M. Langstroth, M.E. Mitchell, J.R. Oliveria, B.M. Richmond, J.W. Schroeder

Epigenetics in captivity: Restoring wild phenotypes in captive-reared salmonids Epigenetics in captivity: Restoring wild phenotypes in captive-reared salmonids

Captive rearing is a common practice for the stocking, conservation, and supplementation of fish species worldwide, but captive-reared fish can exhibit altered phenotypes leading to reduced fitness in nature compared to wild conspecifics. In salmonids, certain studies have found limited genetic differentiation between wild and captive-reared fish. However, documented changes in gene...
Authors
Tia Attfield, Andrew Edgar Honsey, Amanda Susanne Ackiss, Andreas Luek, Brian Meagher, Hayley Nuetzel, Ilana Koch, Julien April, Kristy Wakeling, Kyle Wellband, Raphael Bouchard, Sarah J. Lehnhert, Shawn R. Narum, Timothy Healy, Trevor E. Pitcher, Clare J. Venney

Modeling species co-occurrence effects to inform invasive barred owl management and recovery of the northern spotted owl Modeling species co-occurrence effects to inform invasive barred owl management and recovery of the northern spotted owl

Robust estimation of wildlife populations represents a cornerstone of wildlife research and provides critical information to guide management, including identifying at-risk species, setting harvest rates, and evaluating predator and invasive species control programs. Efforts to enhance population estimation have long included influences one species may have on another, beginning with...
Authors
Vaibhava Srivastava, Nicholas J. Van Lanen, Rana D. Parshad

Spatial units to support Lake Erie Cisco Coregonus artedi restoration Spatial units to support Lake Erie Cisco Coregonus artedi restoration

At the request of the Lake Erie Committee, spatial units for Lake Erie Cisco were delineated during spring 2024. Spatial units correspond to the reproductive habitat of extirpated (unoccupied spatial units) and extant (occupied spatial units) populations. Spatial units were delineated using a Council of Lake Committees-endorsed method that involves synthesizing data for evaluation by a...
Authors
Joshua P. Egan, Amanda Susanne Ackiss, Andrew M. Muir

The effects of scientific uncertainty and values trade-offs on flow management decisions for an endangered fish The effects of scientific uncertainty and values trade-offs on flow management decisions for an endangered fish

Consumptive use of freshwater is of concern in many estuarine ecosystems, and various frameworks have been used to prescribe environmental flows to benefit native species. However, few of these frameworks explicitly examine the potential trade-offs between socioeconomic and conservation-oriented values. This is exemplified in California, USA, where freshwater management has been an area...
Authors
Brian Mahardja, William E. Smith, Brian D. Healy, Cameron Koizumi, Matthew L. Nobriga, Shawn Acuña, Brian A. Crawford, Kristin K. Arend, Michael C. Runge

Alternative future vegetation pathways reveal potential transformations of western US ecosystems Alternative future vegetation pathways reveal potential transformations of western US ecosystems

Managing ecosystems in an era of rapid change is inherently challenging not only because of uncertainty in future climate but also due to diverse responses of ecosystems to climate. Projections of ecological transformation alongside information about plausible vegetation trajectories can help land managers explore divergent scenarios and consider how modeled outcomes match their...
Authors
Tyler J. Hoecker, Kimberley T. Davis, Caitlin E. Littlefield, Jeffrey C Chandler, Sean A. Parks, Andy John Maguire, Kerry Kemp, Svetlana Yegorova, Solomon Dobrowski

Monitoring nesting waterbirds for the South Bay Salt Pond Restoration Project—2024 breeding season Monitoring nesting waterbirds for the South Bay Salt Pond Restoration Project—2024 breeding season

The San Francisco Bay supports thousands of breeding waterbirds annually and hosts large populations of American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), and Forster’s terns (Sterna forsteri). These three species have relied largely on former commercial salt ponds in south San Francisco Bay, which provide wetland foraging habitat and island nesting...
Authors
Joshua T. Ackerman, C. Alex Hartman, Mark P. Herzog

Stochastic within-host dynamics and climate-sensitive traits generate predictable patterns of variation in disease outcomes Stochastic within-host dynamics and climate-sensitive traits generate predictable patterns of variation in disease outcomes

Understanding how climatic variables impact host-pathogen relationships in temperature-sensitive ectothermic host organisms is crucial under global change. Few studies have explored how temperature gradients generate inter-individual variation in epidemiological traits like host susceptibility or pathogen replication. Here, we develop a mathematical model to explore a novel hypothesis...
Authors
Andrew Carlino, Malina Mariko Loeher, David James Páez, Paul Hershberger, Nathan Wolf, Joseph R. Mihaljevic

Who needs closure? Estimating abundance with a Markovian availability model for geographically open removal sampling Who needs closure? Estimating abundance with a Markovian availability model for geographically open removal sampling

Removal sampling is an important method for estimating abundance, but nearly all removal models assume closure during sampling. Yet, closure may be difficult to assume, evaluate, or enforce in many settings. To address situations where populations are geographically open between each removal sample, we incorporated a Markovian availability process into an N-mixture model framework. This...
Authors
Russell W. Perry, Adam C. Pope, A. Noble Hendrix, Joseph E. Kirsch, Bryan G. Matthias, Michael J. Dodrill

The impacts of co-circulating pathogens in Pacific herring depend on interactions between viral life-cycle traits and transmission parameters, highlighting interdependencies between pathogen epizootics The impacts of co-circulating pathogens in Pacific herring depend on interactions between viral life-cycle traits and transmission parameters, highlighting interdependencies between pathogen epizootics

The average host susceptibility decreases as the epizootic progresses because easily infected hosts are first removed from the population. While host susceptibility is pathogen-specific, it is likely that host susceptibility is correlated between different pathogens, so that co-circulating pathogens may have reciprocal impacts on their epidemics. However, despite well-documented examples...
Authors
David James Páez, Courtney Ann Grady, Jacob L. Gregg, William N. Batts, Shayla Ferreiro-Luce, V. L. Herron, Malina Mariko Loeher, Sarah Williamson, Paul Hershberger

Comparison of nonlethal techniques as indicators of lipid content in Lake Whitefish Comparison of nonlethal techniques as indicators of lipid content in Lake Whitefish

Objective Energetic reserves are important indicators of the relative health of fish and fish populations. Body condition indices that relate fish weight to length are commonly used as quick, noninvasive methods for approximating lipid content and condition. A microwave meter (i.e., fat meter or energy meter) is a noninvasive method found to be more accurate in some species. The...
Authors
Tyler Reid Funnell, Jenus Shrestha, Rachel R. Leads, Christopher M. Holbrook, Koji Sano, Cheryl A. Murphy
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